Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00348 ATGGAAAATCCTACCCAAGACCACCCAAACAGCCAGAGCCATGGCTCTGACAGGAATGAACCGGTTAGGTCAAGGTGGAACCCAAAGCCTGAGCAAATTCTTATTCTCGAGTCAATCTTCAACAGCGGAATGTCTAATCCTCCGAAAGAAGAAACAGTGAAAATCAGAAAGTTGCTCGAGAAATTCGGGTCTGTCGGCGATGCAAACGTCTTCTACTGGTTTCAAAACCGGCGGTCTAGGTCTCGCCGGAGGCAGAGGCAGATTCAGGCGAGTCTTGAGCAGAGAAATCAGGGTTTCAAAAGTGGGGGTGCAATTCAGACCGAAGCTTCTGCTTCATCTACCATGGAGTTTGGGTCTTCTTCCTCCTCGTTCTTTGGAGGCTCTTCTTCTTCTTATGGAGTTAGAAGAGATGATGGGTTTTCGAACAGTTTCCTTCCAGCTTCTCCTCAAATGGGTTTCCCTGAATTTGAGCAAAGCTTTTCTGTAACTCCTGGCTTTTGCCATTCCTCAGACTCTGCAAATTTTCATTTTCAACAAGGGTTGATAATGGTTTTCATCAATGGAGTTGCAACAGAAGTTCCAAATGGATCTTTTCATGTGAAATCAATGTTTGGAGAAGATGCAGTTTTGGTTCATTCTTCTGGAGTCCCACTTCCTGTCAACGACTTTGGATTTTTAGAGGACACTTTGCATAGCGGTGAAAGCTATTTTTTGGTAATTAACTTCCCCCTTTCATGCTTAATTACATATTAA 753 43.82 MENPTQDHPNSQSHGSDRNEPVRSRWNPKPEQILILESIFNSGMSNPPKEETVKIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQIQASLEQRNQGFKSGGAIQTEASASSTMEFGSSSSSFFGGSSSSYGVRRDDGFSNSFLPASPQMGFPEFEQSFSVTPGFCHSSDSANFHFQQGLIMVFINGVATEVPNGSFHVKSMFGEDAVLVHSSGVPLPVNDFGFLEDTLHSGESYFLVINFPLSCLITY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13981045 13982753 - BLOR21263 Blo09g00348 64975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00348 250 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Blo09g00348 250 Gene3D - 23 90 - -
Blo09g00348 250 MobiDBLite consensus disorder prediction 90 112 - -
Blo09g00348 250 MobiDBLite consensus disorder prediction 83 112 - -
Blo09g00348 250 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 241 IPR044558 GO:0003700|GO:0048830
Blo09g00348 250 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 241 - -
Blo09g00348 250 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Blo09g00348 250 MobiDBLite consensus disorder prediction 1 17 - -
Blo09g00348 250 MobiDBLite consensus disorder prediction 1 28 - -
Blo09g00348 250 SUPERFAMILY Homeodomain-like 19 89 IPR009057 -
Blo09g00348 250 SMART HOX_1 21 88 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00348 - - - tcc:18599775 276.174
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g01201 Blo09g00348 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00348 Blo-Chr9:13981045 Blo14g00416 Blo-Chr14:4650611 4.42E-12 dispersed
Blo07g01201 Blo-Chr7:31895914 Blo09g00348 Blo-Chr9:13981045 1.00E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g89 . . . . Bpe04g01358 Bpe03g01065 Bma04g01433 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0444 Cone19ag0299 . . . . Blo07g01201 Blo09g00348 Bda03g01494 Bda05g00996 . . . . Sed02g0298 . . . Cma14g00454 . Car14g00419 Cpe03g00402 . Bhi11g02705 Tan08g1414 Cmetu04g2331 Lac10g2499 . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12773 PF00046 Homeodomain 9.20E-14 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00348 Blo_Chr09 FPKM 18.076262 17.405195 13.901672 15.648348 16.809753 14.844138 16.062908 13.466298 15.539913 16.118118