Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00397 ATGGCTTCTTCTTCCTCTGATCCTAGTTTGAAGCACGAAGTCGGAGGCAGTAGCGGAGGAGGAGACGAGAATTCGGAGGCCGTCGTAGCTAACGACCAGCTTTTGCTTTACAGAGGATTGAAGAAAGCAAAGAAAGAGAGAGGATGTACGGCAAAAGAGCGAATCAGTAAAATGCCTCCCTGTGCTGCTGGAAAGCGGAGTTCCATTTATCGCGGAGTCACCAGAAGGTTTGGAAAGTGGTTACTTTTTAAGCATTCATTTGTGCTTCTCTTGGTTTTTTGGTTGGGTATACGGATACGCATGTTGTCTATATATAAACATAGATGGACAGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAACAAGGAGCATACGATGAAGAGGAAGCTGCAGCTCGGGCATATGATCTTGCTGCGTTAAAGTATTGGGGTCCTGGAACCCTCATTAATTTTCCAGTAACTGACTACACAAGAGATCTTGAAGAGATGCAAAATGTATCAAGAGAGGAGTACCTTGCATCTTTAAGAAGAAAGAGCAGTGGTTTCTCTAGAGGAATATCTAAATATCGCGGTCTCTCGAGTCGATGGGAGTCATCATTTGGTCGGGTGGCTGGATCTGAATACTTCAACAGCATAAATTATGGTATAAGTGATGATCCAGTAGCAGAGAGAGAATTTATAAATAACTTCTGTATCGAAAGGAAGATCGACTTGACAAGTTACATCAGGTGGTGGGGGCCTAACAAAACTCGTCAAGTGGATCACGGGTCAAAATCAAACGAAGAAACTAAACATAGTTGTGCTGGAGAGGTTGAAAGTGAGCTTAAAACTATGGAATGGCAAGTTCAACATAGTGAGCCATATGAAATGCCACGTTTGGGAATATTCCACAACAGAAAGGAACATAAAGGCTTCAAAGTCTCTGCCTTGAGCATCTTGTCTCGATCAGCTGCCTACAAGAGTTTGCAAGAGAAAGCATTGACATTGCAGGAAAATGGCAATGAGAATGATGAAAATGAAAACAAAAATACTGTTAAAATGGACCATGGGAAGACAATTGAGAAATCTGATAATCAGGCTGGTAGTAAGAACTTTGGAGTTGCCCAAGGAATGAGTGGAGGATTGGCTATTCAAAGAAATGCTTTCCCATTGACCCCGTTCTTAACAGCACCACTTCTGACAAGTTATAGTAATGTTGATCCATTAGTTGATCCCATTCTTTGGTCGTCTATGGTTCCTGTTCTTCCTGCTGAACTTCCTCGTGCAGTTGAGGTTTGTACAATTCTGTGGTAA 1326 42.23 MASSSSDPSLKHEVGGSSGGGDENSEAVVANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRRFGKWLLFKHSFVLLLVFWLGIRIRMLSIYKHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWESSFGRVAGSEYFNSINYGISDDPVAEREFINNFCIERKIDLTSYIRWWGPNKTRQVDHGSKSNEETKHSCAGEVESELKTMEWQVQHSEPYEMPRLGIFHNRKEHKGFKVSALSILSRSAAYKSLQEKALTLQENGNENDENENKNTVKMDHGKTIEKSDNQAGSKNFGVAQGMSGGLAIQRNAFPLTPFLTAPLLTSYSNVDPLVDPILWSSMVPVLPAELPRAVEVCTILW 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14885364 14888926 + BLOR21312 Blo09g00397 65024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00397 441 Pfam AP2 domain 104 155 IPR001471 GO:0003700|GO:0006355
Blo09g00397 441 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 76 - -
Blo09g00397 441 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 424 - -
Blo09g00397 441 MobiDBLite consensus disorder prediction 1 25 - -
Blo09g00397 441 PANTHER BNAA03G19580D PROTEIN 2 76 - -
Blo09g00397 441 PANTHER BNAA03G19580D PROTEIN 104 424 - -
Blo09g00397 441 SMART rav1_2 104 169 IPR001471 GO:0003700|GO:0006355
Blo09g00397 441 ProSiteProfiles AP2/ERF domain profile. 98 163 IPR001471 GO:0003700|GO:0006355
Blo09g00397 441 SUPERFAMILY DNA-binding domain 105 164 IPR016177 GO:0003677
Blo09g00397 441 Gene3D AP2/ERF domain 96 165 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00397 Blo-Chr9:14885364 Blo17g00353 Blo-Chr17:3726507 4.22E-56 dispersed
Blo09g00397 Blo-Chr9:14885364 Blo01g00418 Blo-Chr1:4714030 2.26E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12778 PF00847 AP2 1.10E-06 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00397 K09285 - cit:102624476 592.038