Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00427 ATGGCCCATCATCTCTTAACGGCTTCAACGGTTTTAGCTGACGTGGTTTCCATGTCAGCATTCGCCTGCAAAAATACTCTTTCCTGCAACTGCGTCATTTTAGTCACTGTCTTTTCAGTTTCTAGCTCTCTCTCACTCTCTCTCTCTCTCTCTGGTCATATTTTCTCGCCAGGCAAACAGTTGGTTATCGTCTTCGTCAAAGAATTCTCTCTTTATCCAGTCCTAGAGCAGAGGTTTTTCACTTTCGATTTGGAGTTAAAGAGAAAGAAGAAGAATCTGTCGAAAGAAATGAGCAGATATGTCGCATTCAGGTGTTTCGCTATAGCTGTCTTCTTGACAATTCTTGCCGCACCGGCTCAGGCATTAACTGACCAACGCGACGTCGAAGCTCTTCAAGATTTGTTCAGGGCTCTGAACTGTTCATCAGCTCTTAAGGGCTGGAGATTAGATAGCGTGGATCCCTGTGAAGAATTATGGACAGGAGTTTCTTGTTCTGGGTCATCTGTAATACATCTGGATGTTAGCTCCAATAGAATTCAGGGTAAAATTCCAGAAGGCCTTCCGCCTAATGCTACTCATATAAATATGGCATGCAACAATTTAAACGAAAGTATTCCTTATACTTTATCTGTCATGAAAAGCCTTCGCCATCTGGATTTGTCATTCAATAACTTCTCAGGGGATCTACCTAGTTCATTTGGATCTCTGACAAATATCACGAAGTTGTTTTTACAGAATAACAAGTTCACTGGATCAGTTGCCTACTTGGCTAACCTATCGCTATCTGATCTGAATATCCAAGAAAATTTTTTTAGTGGTATTATTCCCATGAATTTTCATACCATACCAAATTTATGGCTTGGAGGGAATAAGTTTCATGTATGGGACACCCCACCTTGGAATTTCCCTTTGGATTCAGTACCTAGGAATCAAAACATTAGTGGCCCTCCTACGTCTGAGTCCAGTGCAATTGAGAATAGTCCCTCTATTAGAAAGATTGAGCATAAGAAAAGAAAGCTGGGACCTGGTGGTATAGCTTTCATGGTTGGTGGTGCAACTCTAATGGCAACTTGTATAGCTCTTTATGTTGTTATCCAAGTAAATCGATCCCGAGCAAATAAGCGTACAAGCTTGGCAACTTATGATGCTTCTTCTCATTCTCTTCCTATCAACACAACTGGAGAGGAGATTTCTTTTACACTGCCACAGATGATGGCTGTCCGTTCTCCACCCCTTCTTGCTCCAATGCGCAAATCTCCAATATACCACACAGGGAATGAAATGCCGTCAAAAAGAAAAAGTTTTTCTGAGAGAGGCAGATTGTCATTCAGAACAAAAATTTTTACTGTCGCAGAGCTTCAATTTGCTACAAACAGCTTCAGTGAAGAAAACCTTCTTGGGGAGGGATCTCTTGGTTCTGTTTACAAAGCAAAATTTCCTGATGGTCAAGTCTTGGCTGTGAAGAATATCAACCTGGTGGCACTATCTGTCACTGAAGAAGATGAGTTCTTGGATGTGGTTTGGACGGCATCATGTTTGAGGCATCCTAACATAGTACCACTTATCGGTCACTGCACAGAGCATGGACAGCATCTTCTTGTGTATGAATACATCCCTAATTTGACTCTTTATGATGCTTTGCACGGTGATGCCTGCAAACCTCTGTCATGGAGAATGAGAATCCAGATTGCCCTCGGCATTGCAAGGGCTTTGGCTTATTTACACTCTACATTTTCACAACCTTCTGCTCATTACAATCTGAAGGCTGCCAATATCTTACTAGACAAAGATCTAACGCCTCATGTTTCTGACTGCGGGCTAGCTGTTTTGAGGCCACTTACTAGCACCAGAGTTAAAATTAAGGCAAGTACTTTGGCATCTGAAATTGCCATTGGTGATAGCGGCTACATTGCACCTGAACACGGCCAACCAGGAACTGATGTTACAAAGAGTGACGTGTATGCTTTTGGAGTTTTGCTGTTGGAGCTGGTAACAGGAAGGAAACCCTTTGACGATTCAAGACATATAAAAGAGCAGTCTCTAGTAAACTGGGCTTCGTCTAGACTACATGACAATGAGAGTTTAAAGCAGATGGTTGATCCAAGAATTAAAGGAACATTTTCCTCGAAGACTCTCTCCCACTACACTGATATAGTCTCCCTCTGTATACAGCAGCCAGTGAAGGAATTCCGGCCACCAATGGCAGAAGTAGTGGAATCACTTGCCGGAATTGTCCGACAGCTAAAGCAGGCAAAAAGTGGTGCACCAGAACCAGAAGGTACTGATATTGTTCCTCCTGATATGTCTTTTCGTTCGACCAATACCCGCTTCATAGGTTCGCCGTCTTTGAGCATTTTATCCATCTGA 2367 42.5 MAHHLLTASTVLADVVSMSAFACKNTLSCNCVILVTVFSVSSSLSLSLSLSGHIFSPGKQLVIVFVKEFSLYPVLEQRFFTFDLELKRKKKNLSKEMSRYVAFRCFAIAVFLTILAAPAQALTDQRDVEALQDLFRALNCSSALKGWRLDSVDPCEELWTGVSCSGSSVIHLDVSSNRIQGKIPEGLPPNATHINMACNNLNESIPYTLSVMKSLRHLDLSFNNFSGDLPSSFGSLTNITKLFLQNNKFTGSVAYLANLSLSDLNIQENFFSGIIPMNFHTIPNLWLGGNKFHVWDTPPWNFPLDSVPRNQNISGPPTSESSAIENSPSIRKIEHKKRKLGPGGIAFMVGGATLMATCIALYVVIQVNRSRANKRTSLATYDASSHSLPINTTGEEISFTLPQMMAVRSPPLLAPMRKSPIYHTGNEMPSKRKSFSERGRLSFRTKIFTVAELQFATNSFSEENLLGEGSLGSVYKAKFPDGQVLAVKNINLVALSVTEEDEFLDVVWTASCLRHPNIVPLIGHCTEHGQHLLVYEYIPNLTLYDALHGDACKPLSWRMRIQIALGIARALAYLHSTFSQPSAHYNLKAANILLDKDLTPHVSDCGLAVLRPLTSTRVKIKASTLASEIAIGDSGYIAPEHGQPGTDVTKSDVYAFGVLLLELVTGRKPFDDSRHIKEQSLVNWASSRLHDNESLKQMVDPRIKGTFSSKTLSHYTDIVSLCIQQPVKEFRPPMAEVVESLAGIVRQLKQAKSGAPEPEGTDIVPPDMSFRSTNTRFIGSPSLSILSI 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15243225 15248767 - BLOR21342 Blo09g00427 65054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00427 788 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 171 218 - -
Blo09g00427 788 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 213 750 - -
Blo09g00427 788 MobiDBLite consensus disorder prediction 306 330 - -
Blo09g00427 788 Gene3D Ribonuclease Inhibitor 122 343 IPR032675 -
Blo09g00427 788 Pfam Leucine rich repeat N-terminal domain 125 165 IPR013210 -
Blo09g00427 788 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 105 171 - -
Blo09g00427 788 Gene3D Transferase(Phosphotransferase) domain 1 538 759 - -
Blo09g00427 788 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 105 171 - -
Blo09g00427 788 SUPERFAMILY L domain-like 129 293 - -
Blo09g00427 788 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Blo09g00427 788 SUPERFAMILY Protein kinase-like (PK-like) 435 741 IPR011009 -
Blo09g00427 788 MobiDBLite consensus disorder prediction 306 328 - -
Blo09g00427 788 Pfam Protein kinase domain 461 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo09g00427 788 ProSiteProfiles Protein kinase domain profile. 460 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo09g00427 788 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 171 218 - -
Blo09g00427 788 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 213 750 - -
Blo09g00427 788 Gene3D Phosphorylase Kinase; domain 1 424 537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00427 - - - qsu:112030392 843.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00427 Blo-Chr9:15243225 Blo13g00991 Blo-Chr13:32330973 3.75E-102 dispersed
Blo09g00427 Blo-Chr9:15243225 Blo15g00549 Blo-Chr15:10661309 2.59E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00549 . 31 753 Strubbelig Receptor Gene Family AT4G03390 62.9 6.2e-211 731.1
Blo02g00087 . 39 765 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-180 629.8
Blo07g00813 . 365 657 Strubbelig Receptor Gene Family AT4G03390 57.7 3.1e-93 340.1
Blo14g00015 . 95 385 Strubbelig Receptor Gene Family AT4G03390 58.5 1.5e-92 337.8
Blo09g00427 . 113 787 Strubbelig Receptor Gene Family AT5G06820 51.2 1.4e-164 577.0
Blo10g00929 . 21 677 Strubbelig Receptor Gene Family AT1G78980 59.5 8.1e-186 647.5
Blo05g00016 CCT 251 556 Strubbelig Receptor Gene Family AT1G78980 60.9 9.5e-102 368.2
Blo14g00015 . 92 399 Strubbelig Receptor Gene Family AT1G78980 54.3 2.0e-91 334.0
Blo15g00549 . 27 627 Strubbelig Receptor Gene Family AT2G20850 51.0 9.1e-131 464.5
Blo14g00015 . 91 259 Strubbelig Receptor Gene Family AT2G20850 56.8 2.5e-51 200.7
Blo10g00929 . 20 660 Strubbelig Receptor Gene Family AT3G13065 50.3 7.3e-139 491.5
Blo05g00016 CCT 248 539 Strubbelig Receptor Gene Family AT3G13065 59.7 1.4e-97 354.4
Blo14g00015 . 94 382 Strubbelig Receptor Gene Family AT3G13065 51.5 4.8e-82 302.8
Blo13g00991 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 3.0e-84 310.1
Blo10g00947 CCT 1604 1898 Strubbelig Receptor Gene Family AT1G11130 52.0 2.0e-83 307.4
Blo07g00813 . 369 651 Strubbelig Receptor Gene Family AT1G11130 51.6 7.0e-81 298.9
Blo14g00015 . 86 382 Strubbelig Receptor Gene Family AT1G11130 51.5 5.9e-80 295.8
Blo15g00549 . 27 627 Strubbelig Receptor Gene Family AT2G20850 51.0 9.1e-131 464.5
Blo14g00015 . 91 259 Strubbelig Receptor Gene Family AT2G20850 56.8 2.5e-51 200.7
Blo09g00427 . 113 787 Strubbelig Receptor Gene Family AT5G06820 51.2 1.4e-164 577.0
Blo15g00549 . 31 753 Strubbelig Receptor Gene Family AT4G03390 62.9 6.2e-211 731.1
Blo02g00087 . 39 765 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-180 629.8
Blo07g00813 . 365 657 Strubbelig Receptor Gene Family AT4G03390 57.7 3.1e-93 340.1
Blo14g00015 . 95 385 Strubbelig Receptor Gene Family AT4G03390 58.5 1.5e-92 337.8
Blo10g00929 . 20 660 Strubbelig Receptor Gene Family AT3G13065 50.3 7.3e-139 491.5
Blo05g00016 CCT 248 539 Strubbelig Receptor Gene Family AT3G13065 59.7 1.4e-97 354.4
Blo14g00015 . 94 382 Strubbelig Receptor Gene Family AT3G13065 51.5 4.8e-82 302.8
Blo10g00929 . 21 677 Strubbelig Receptor Gene Family AT1G78980 59.5 8.1e-186 647.5
Blo05g00016 CCT 251 556 Strubbelig Receptor Gene Family AT1G78980 60.9 9.5e-102 368.2
Blo14g00015 . 92 399 Strubbelig Receptor Gene Family AT1G78980 54.3 2.0e-91 334.0
Blo10g00947 CCT 1224 1913 Strubbelig Receptor Gene Family AT1G53730 59.2 2.1e-192 669.5
Blo07g00813 . 1 666 Strubbelig Receptor Gene Family AT1G53730 59.8 1.3e-178 623.6
Blo05g00016 CCT 169 550 Strubbelig Receptor Gene Family AT1G53730 72.1 6.7e-151 531.6
Blo13g00991 . 50 677 Strubbelig Receptor Gene Family AT1G53730 50.3 2.6e-142 503.1
Blo14g00015 . 68 385 Strubbelig Receptor Gene Family AT1G53730 58.9 1.2e-102 371.3
Blo10g00947 CCT 1236 1918 Strubbelig Receptor Gene Family AT3G14350 59.2 1.7e-180 629.8
Blo05g00016 CCT 169 550 Strubbelig Receptor Gene Family AT3G14350 63.8 9.3e-126 448.0
Blo14g00015 . 89 385 Strubbelig Receptor Gene Family AT3G14350 56.9 1.5e-86 317.8
Blo13g00991 . 147 685 Strubbelig Receptor Gene Family AT4G22130 61.4 5.8e-174 607.8
Blo14g00015 . 55 407 Strubbelig Receptor Gene Family AT4G22130 72.1 5.4e-148 521.5
Blo10g00947 CCT 1610 1929 Strubbelig Receptor Gene Family AT4G22130 61.7 3.9e-114 409.1
Blo05g00016 CCT 245 565 Strubbelig Receptor Gene Family AT4G22130 62.3 6.7e-114 408.3
Blo07g00813 . 347 670 Strubbelig Receptor Gene Family AT4G22130 62.5 1.1e-113 407.5
Blo10g00929 . 346 675 Strubbelig Receptor Gene Family AT4G22130 54.4 3.1e-103 372.9
Blo15g00549 . 440 745 Strubbelig Receptor Gene Family AT4G22130 57.7 1.1e-97 354.4
Blo02g00087 . 472 765 Strubbelig Receptor Gene Family AT4G22130 54.9 2.0e-89 327.0
Blo11g00301 . 439 721 Strubbelig Receptor Gene Family AT4G22130 58.2 1.7e-88 323.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84472 PF00069 Pkinase 9.50E-32 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00427 Blo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0