Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00482 ATGTCTGTAAATCACTTCCACTCCGACCTTCCTGCAACTTTCATCTTGCCCCAGCACCTTCAACATAATCCAACCATGGAAAATCAAGCTTCTTCTCAAACATTCAACTCTCAGCGCTCTACCCACCTGAGCCAACCTTGGCCGGTTAATAATTTCAACCTCAACAGAGGAAGCAATGTCTTGGAAGACGAAGTCGACGACCCAGCTGGAGCGGATTGCGGAGAAGACGGCGCGGCCAGCGCCTGCCAACGAGAGTGGGAGGAAACGGGGGATAGAGAATCGATGTTCGAAAAGGCACTAACGCCGAGTGATGTAGGAAAATTGAACCGGCTTGTCATTCCGAAACAACACGCCGAGAAATACTTTCCCCTCGGTGGCGTGGGAGACTCCGGTGACAGGGGTTTGCTTCTGAGCTTCGAGGACGAGGCCGGAAAATCGTGGAGGTTCCGTTATTCTTACTGGAACAGTAGCCAAAGCTACGTTCTCACTAAAGGGTGGAGCCGGTACGTTAAAGAGAAGAGGCTGGAATCCGGCGACGTCGTTTTCTTTCAGCGACACCAGACCGACGGGGACCGGCTGTTTATAGGGTGGAGGCGGCGACCGGCGCACGATAGCAGCAGTGCAGTGATGGCGCAAGAATGTGATGGTAATAGTAATGGAGGGAGTGGGGGTTGGACCAGGCTGTTCTATTCTGCGCATCCTTATCCTGTTCACAGCCATCATCACGATCATCAACATCATCGCCATCATAATCTTCCAGCAGCATGCCAACCTGACCATCTTCACCCTGGGTCGGCCTCCGCCCAGAGCCCAGCAGCATCCGCCGGAAACTCGAAGATCCTAAGACTCTTCGGCGTGAACATGGAGTGCCAAACGGACGTCTCCGGCGACCCATCTGCAACTCCTCCTTTTATTTCCGATCTAGCCCCACCCAATTCTCAGTTCTTCCCCCAGCGCTTTTTTTCAAACCCTCCTACTAATCATACGGATTTAATGTTTTCCCAAGATGTCAACCGAAGAAGAAATAGCCGAGGAGGATGA 1041 52.45 MSVNHFHSDLPATFILPQHLQHNPTMENQASSQTFNSQRSTHLSQPWPVNNFNLNRGSNVLEDEVDDPAGADCGEDGAASACQREWEETGDRESMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGVGDSGDRGLLLSFEDEAGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLESGDVVFFQRHQTDGDRLFIGWRRRPAHDSSSAVMAQECDGNSNGGSGGWTRLFYSAHPYPVHSHHHDHQHHRHHNLPAACQPDHLHPGSASAQSPAASAGNSKILRLFGVNMECQTDVSGDPSATPPFISDLAPPNSQFFPQRFFSNPPTNHTDLMFSQDVNRRRNSRGG 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16048397 16050138 + BLOR21397 Blo09g00482 65109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00482 346 CDD B3_DNA 95 190 IPR003340 GO:0003677
Blo09g00482 346 ProSiteProfiles B3 DNA-binding domain profile. 96 201 IPR003340 GO:0003677
Blo09g00482 346 SMART B3_2 96 201 IPR003340 GO:0003677
Blo09g00482 346 Pfam B3 DNA binding domain 96 200 IPR003340 GO:0003677
Blo09g00482 346 SUPERFAMILY DNA-binding pseudobarrel domain 92 201 IPR015300 -
Blo09g00482 346 Gene3D - 90 208 IPR015300 -
Blo09g00482 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 51 293 IPR044800 GO:0003700
Blo09g00482 346 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 51 293 - -
Blo09g00482 346 MobiDBLite consensus disorder prediction 25 46 - -
Blo09g00482 346 MobiDBLite consensus disorder prediction 239 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00482 Blo-Chr9:16048397 Blo19g00130 Blo-Chr19:3745824 1.56E-47 dispersed
Blo09g00482 Blo-Chr9:16048397 Blo12g00198 Blo-Chr12:12940147 3.06E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12787 PF02362 B3 7.40E-30 CL0405 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00482 - - vvi:100245964 296.204