Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00527 ATGGCGGTCGCTCCGACGGCGTCCACCAACTACCTTTCGCTTTACGTCGGTGATCTTCATCCCGACGTCACGGAGGAGATTCTTCGTAATGCTTTCTCCCAATTCGAGAGCCTCGCCTCGGTTCGTGTCGCTAGGGACTCTACTACTGACCGTTCCCTCTGTTACGGTTACGTCAATTTCATCGCTCATGAAGATGCAACCAACGCTATACGGGAAAAGAATCACAGTATTTTGAATGGAAATATGATAAGAGTCATGTGGTCGCATCGTGATTCTGATGCAAGGAAAAGTGGAATTGGCAATGTGTTTGTCAAGAACTTGAGTGATTCGGTCAGTAGTTTGGAGCTTGAAGAAATGTTTAGTCGTTTTGGAAATATTGTCTCCTGCAAAGTTCCCATGACTGAGGACGGGAAGAGCAAATGTCACGGCTTTGTACAGTTTGAGTCTGAAAATTCTGCAGCTGCTGCTATTGAGAAGTTTAATGGCTTAAATATAGATGGGAAGCAAATCTATGTTGGAAAGTTCATTAAGAAAAGCGACCGAGTTATGGCTGCTAGCACTGGTACTAAATTTACAAATTTGTATGTGAAGAATTTGGATCCAGAAATTGTGGAGGAGCTTCTGCATAAAAAGTTTTCTGAGTTTGGAAAAATTGCTAGCTTGTTTATTGCAAAAGATGACAATGGACTATCTAAAGGTTTTGGGTTTATAGACTTTGATAACTCTGATGATGCTAAACGAGCAATGGAAGTGATGAACGGATCACAAGTTGGTTCAAAGGTTCTCTATGTAGCAAGGGCACAAAAGAAGGCAGAGCGCAAACAAATGTTACACAGACAGTTTGAAGAAAAGTGCGAGGACCAACACAAGGGCTTAAATGTGTATATAAAGAATATCAATGATGATGTCACGACTGAAGATCTGACAAAACATTTCAGTCAGTGTGGCACAATTACTTCCGTAAAAATTATGCAGAATGACAAAGGAATAAGCAAAGGGTTTGGATTTATTTGTTTCTCTTGTCAGGAGGAAGCAAACAAAGCCGTGAATACCTTTCATGGACATATGTTTCATAATAAGCCGTTGTATGTGGCTATTGCTCAAAGAAAAGAGGAAAGACAAACTCAACTGCAACATCATTTTGCTCAGCGTATGGCTGGACTGGTTCCTGGTGGATATCCTTCCTACTACTACACATCTCCTCTGGGAGCTCTTCCAGCTACCCCTATGCCACAGAGACGAGGCCTGATTTATCAATCTTTAGGGTTAAGGCCAGGATGGAGGCCCAATAGCTTTGTTTCTCCAAATAGACCTAGCTTTCAACCGTTGCCTGCCTCTTTTATTCCTAATGCTCCTAGACAAGGTAATAAGTATAACAGGGTAAGGTCGAATGGCCAAATGCTTGCTCAAAATAACGCTCACGCGGGTTCGTATAAACAACATTTCCAGCAACAAAATCAATCTGTGATTCCTTCCAACGATTCAGGCTATTATCAGGTCATCTGCAGTGTATTCTCTGAACTTCATTTTCTTTCAGACCATAATATAAAATCCAATTTTGGGCAATTACCTTTAATGTCATTGTTGGCTGAAAAATGTAAAATAAGTTTAAAATGTCATTTTGTGCATCATTTTCTTATTGATGGACAGTCTCATTATACCCGTTCGAAAACAGCTGGGGTTGGATCAGAGGACTCAGTGGTACTGAGCCGTAAGCTTGCTGCTGCTTCTCCTGATCAACAGAAACAAATGCTTGGGGATCGTCTCTATCCACTCGTCGAAAATTATAAGCCGGAGCTTGCAGCAAAAATAACAGGAATGCTTCTGGAGATGGACAGCGTGGAATTGCTACACTTGTTGGAGTCACCCGAGTCGCTGGCTGCCAAAGTAGAGGAAGCAACGCAAGTTCTGAAGATGTCAAAGACCGAAGTATCGAGCCAAGACTCAGTTCATAACTCCAGTTATCTATCAGCTGAGGTTGCTGTCAATTGA 1992 41.92 MAVAPTASTNYLSLYVGDLHPDVTEEILRNAFSQFESLASVRVARDSTTDRSLCYGYVNFIAHEDATNAIREKNHSILNGNMIRVMWSHRDSDARKSGIGNVFVKNLSDSVSSLELEEMFSRFGNIVSCKVPMTEDGKSKCHGFVQFESENSAAAAIEKFNGLNIDGKQIYVGKFIKKSDRVMAASTGTKFTNLYVKNLDPEIVEELLHKKFSEFGKIASLFIAKDDNGLSKGFGFIDFDNSDDAKRAMEVMNGSQVGSKVLYVARAQKKAERKQMLHRQFEEKCEDQHKGLNVYIKNINDDVTTEDLTKHFSQCGTITSVKIMQNDKGISKGFGFICFSCQEEANKAVNTFHGHMFHNKPLYVAIAQRKEERQTQLQHHFAQRMAGLVPGGYPSYYYTSPLGALPATPMPQRRGLIYQSLGLRPGWRPNSFVSPNRPSFQPLPASFIPNAPRQGNKYNRVRSNGQMLAQNNAHAGSYKQHFQQQNQSVIPSNDSGYYQVICSVFSELHFLSDHNIKSNFGQLPLMSLLAEKCKISLKCHFVHHFLIDGQSHYTRSKTAGVGSEDSVVLSRKLAAASPDQQKQMLGDRLYPLVENYKPELAAKITGMLLEMDSVELLHLLESPESLAAKVEEATQVLKMSKTEVSSQDSVHNSSYLSAEVAVN 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16476885 16480708 - BLOR21442 Blo09g00527 65154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00527 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Blo09g00527 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Blo09g00527 663 SUPERFAMILY PABC (PABP) domain 565 652 IPR036053 GO:0003723
Blo09g00527 663 CDD RRM1_I_PABPs 13 91 - -
Blo09g00527 663 Pfam Poly-adenylate binding protein, unique domain 573 637 IPR002004 GO:0003723
Blo09g00527 663 Gene3D - 188 275 IPR012677 -
Blo09g00527 663 SMART rrm1_1 13 86 IPR000504 GO:0003723
Blo09g00527 663 SMART rrm1_1 193 265 IPR000504 GO:0003723
Blo09g00527 663 SMART rrm1_1 101 173 IPR000504 GO:0003723
Blo09g00527 663 SMART rrm1_1 293 365 IPR000504 GO:0003723
Blo09g00527 663 PANTHER POLYADENYLATE-BINDING PROTEIN 9 647 - -
Blo09g00527 663 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Blo09g00527 663 SUPERFAMILY RNA-binding domain, RBD 290 395 IPR035979 GO:0003676
Blo09g00527 663 SMART rrm2_1 101 173 IPR003954 GO:0003676
Blo09g00527 663 SMART rrm2_1 193 265 IPR003954 GO:0003676
Blo09g00527 663 SMART rrm2_1 293 365 IPR003954 GO:0003676
Blo09g00527 663 Gene3D - 564 658 - -
Blo09g00527 663 Gene3D - 276 383 IPR012677 -
Blo09g00527 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Blo09g00527 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Blo09g00527 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Blo09g00527 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Blo09g00527 663 PANTHER RNA BINDING PROTEIN 9 647 - -
Blo09g00527 663 Coils Coil 264 284 - -
Blo09g00527 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 369 IPR000504 GO:0003723
Blo09g00527 663 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 565 642 IPR002004 GO:0003723
Blo09g00527 663 Gene3D - 101 187 IPR012677 -
Blo09g00527 663 SUPERFAMILY RNA-binding domain, RBD 189 279 IPR035979 GO:0003676
Blo09g00527 663 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 638 IPR006515 GO:0003723
Blo09g00527 663 SMART poly_2 577 640 IPR002004 GO:0003723
Blo09g00527 663 CDD RRM2_I_PABPs 98 174 IPR045305 -
Blo09g00527 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Blo09g00527 663 Gene3D - 4 100 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g01371 Blo09g00527 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00527 Blo-Chr9:16476885 Blo17g00873 Blo-Chr17:28792878 6.33E-13 dispersed
Blo07g01371 Blo-Chr7:33840541 Blo09g00527 Blo-Chr9:16476885 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00527 K13126 - vvi:100267544 731.095