Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00538 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCTGAAATGCAAGGGCTTGAGCTCGTTTCTCCTTCCACTCCGACGGGCAGAGACCCTGAGGATCAAAGAGGCGAGGAGGGTGCGGAGAAGGCGAAAGGAAGAGAAATGGAGAGCCGGGAACCGAAGGTAGACGGCTGCGGAGGCAGCAGCGGAGAGAAACCGGAGACCGTTCCGCTAGTTGGGTTCCGAGAACTCTTCAGATTCGCCGACGGTTTAGATTACTTTTTGATGGCACTTGGTTCCGCCGGAGCCGTCGTTCACGGTTGTTCTTTGCCCGTGTTTCTCCGGTTCTTCGCCGATCTTGTCAACTCTTTTGGGTCGAATGCTAACAATCTGGACAAGATGACGCAGGAAGTTTTGAAGTATGCATTTTACTTTCTGGTCGTCGGAGCTGCCATATGGGCGTCTTCCTGGGCAGAGATTTCGTGTTGGATGTGGACTGGAGAGAGGCAATCGACGAAGATGAGGATCAAATACCTCGAAGCTGCCTTAAACCAAGACATTCAGTTCTTCGACACGGAAGTTCGAACCTCCGATGTTGTTTCCGCCATTAATACTGATGCAGTGATGGTCCAAGACGCCATTAGCGAGAAGTTGGGTAATTTTATTCACTATATGGCAACTTTTGTGTCTGGTTTTGTGGTGGGTTTTACTGCTGCTTGGCAACTAGCTTTGGTCACTCTGGCCGTCGTTCCTCTCATCGCCATAATCGGAGCTATCCACGCCACCACATTGGCCAAGCTCTCCGCCAAGAGCCAAGAGGCCCTTTCTCAAGCCGGAAACATCGTAGAACAGACAATTGTTCAAATTCGGGTCGTTTTGGCATTCGTCGGAGAATCAAGAGCCTTACATAGTTACTCAGCTGCTCTGAAGGTTTCTCAGAGACTAGGCTACAGAAGTGGATTTGCAAAAGGGTTGGGTCTTGGCGCGACTTACTTTGTTGTCTTCTGCTGCTACGCCCTTCTTCTCTGGTATGGCGGCTTTCTGGTCAGGCACCACCACACCAACGGCGGCCTAGCCATAGCCACCATGTTTTCCGTCATGATAGGTGGACTGGCTTTAGGCCAATCCATTCCAAGCATGACTGCATTTGCCAAAGCAAAAGTTGCAGCTGCTAAAGTACTGCGCATAATCGATCACAAACCTGCAGTCGATCGAAACAGCGAATCGGGTTTGGAATTAGAATCTGTAACAGGACTAGTCGAGCTTAAAAACATAGATTTCTCGTATCCGTCAAGACCAGACGTACGAATACTTAACGACTTCTCCCTCAACGTTCCGGCCGGCAAGACCATAGCTTTGGTCGGTAGCAGCGGCTCGGGGAAGAGCACTGTAGTCTCACTTATTGAAAGATTTTACGACCCCATTTCAGGATGTGTTTTTCTCGACGGGCACGACATAAAGACGCTAAAGCTTAGATGGCTGAGGCAGCAAATAGGGTTGGTCAGTCAAGAGCCAGCTCTGTTTGCGACAACCATTAAAGAGAATATACTCTTGGGAAGGCCTGAGGCAAACCAGCTCGAGGTAGAAGAAGCTGCAAGAGTTGCTAATGCCCATTCTTTCATCATCAAACTTCCTGATGGCTATGATACTCAGGTGGGGGAGAGAGGATTGCAGCTTTCCGGAGGGCAGAAGCAGAGAATCGCTATAGCCCGGGCAATGCTGAAAAACCCTGCAATCTTGCTCTTAGACGAGGCGACCAGTGCCCTTGACTCCGAATCGGAAAAGCTCGTTCAAGAGGCCCTTGATCGGTTCATGATCGGGAGGACAAGTCTCGTGATTGCCCATCGCCTCTCGACCATTCGCAAAGCAGATCTAGTTGCCGTTCTCCAACAAGGAATCGTCTCTGAAATCGGGACCCATGATGAACTCATCGCCAGGGGAGAAAACAGCATCTATGCCAAACTCATCCGGATGCAGGAGACGGCCCACGAAACTGCTCTCAACAACGCTCGAAAAAGTAGTGCAAGACCTTCAAGTGCGAGAAACTCGGTGAGTTCGCCTATAATTGCGCGAAATTCGTCATATGGTCGATCGCCTTATTCACGTCGGCTATCGGACTTCTCCACTTCCGATTTTAGTCTCTCCCTTGACATCTCTCACCCGGGCTATCGGGTCGAAAAGCTTGCGTTCAAGGAGCAAGCCAGCTCCTTCTGGCGCCTAGCAAAAATGAATTCTCCTGAATGGGTTTACGCATTGCTCGGTTCGATTGGCTCCATCGTTTGTGGGTTTTTGAGCGCCTTCTTTGCGTATGTTCTGAGTGCTGTTCTAAGTGTTTACTACAATCCAAGCCATTCTTACATGAGCAGAGAAATAGAGAAGTACTGCTATTTACTGATTGGGCTTTCATCAGCTGCTCTGCTCTTCAACACACAGCAGCATTTCTTCTGGGATATTGTGGGAGAAAATCTTACTACTCGAGTGAGGGAGAAAATGCTTGGGGCTGTGCTAAAAAATGAAATGGCCTGGTTTGATCAGGAGGAAAATGAGAGTGCTAGAATTGCAGCTAGGCTGGCACTAGATGCTAACAATGTCAGATCCGCCATTGGAGATAGAATTTCAGTGATTGTTCAGAACACAGCTCTCATGTTAGTTGCCTGCACTGCTGGGTTTGTGCTGCAATGGCGTCTGGCTCTTGTCCTCGTGGCTGTCTTCCCTGTGGTCGTGGCGGCCACCGTTTTGCAGAAAATGTTTATGACTGGTTTTTCGGGAGATCTGGAAGCATCACATGCAAAGGCGACTCAATTGGCGGGAGAGGCAATAGCCAACGTAAGGACAGTGGCGGCCTTCAATTCCGAGGGGCAAATCGCCAGTCTTTTCTCTTCAAACCTTGAGATTCCTCTAAGACGCTGCTTTTGGAAAGGACAGATTGCTGGAAGTGGATTCGGCGTGGCCCAGTTTTTGCTCTACGCTTCGTATGCTCTCGGTCTTTGGTACGCGTCCTGGCTCGTAAAGCATGGAATCTCGAATTTCTCGAACACAATCCGGGTTTTTATGGTCCTCATGGTCTCAGCCAATGGTGCGGCCGAAACACTGACCTTAGCTCCCGACTTCATCAAGGGCGGTCGAGCCATGCGCTCGGTCTTCGACCTTCTAGATCGAAAAACAGAGATTGAACCTGATGATCTAAATGCCACCCCAGTCCAAGACCGATTACGAGGCGAAGTCGAATTTAAACATGTTGACTTTTCTTACCCGAGTCGATCTGATGTCCCGATTTTCCGTGACCTCACTCTCCGGGCTCGTTCAGGCAAGACTCTTGCCCTTGTTGGCCCAAGTGGTTGCGGTAAAAGCTCGGTAATTGCACTAATCCAGAGGTTCTACGAGCCAACATCCGGACGAGTCATGATCGATGGGAAAGATATCAGAAAATACAATCTCAAGTCCCTCAGACAGCACATGGCAATAGTTCCTCAGGAGCCATGCCTGTTCGGTTCAACCATCTACGAAAACATCGCTTATGGCCGGGAATCAGCTACCGAAACGGAGATAATCGAAGCAGCCACACTGGCCAACGCCCATAAGTTCATATCTGCATTGCCTGATGGGTACAAAACATTTGTAGGGGAAAGAGGTATGCAACTATCAGGTGGGCAGAAACAGAGGATCGCCATTGCTAGAGCTCTGGTCAGGAAGGCAGAGCTGATGCTACTCGACGAAGCAACCAGTTCATTAGATGCCGAATCCGAGCGCTCAGTCCAGGAAGCTCTCGACCGGGCTTGTTCTGGAAAAACAACCATAGTCGTGGCTCATCGGCTGTCAACTATCAGAAATGCTCATGTTATTGCCGTGATCGATGAAGGAAAAGTGGCCGAGCAGGGCTCCCATTCGCATCTTTTGAAAAATTATCCAGACGGGTGTTATGCTCGGATGATTCAGATACAAAGATTTACCCATAACCAAGTCATCGGGATTGCTTCGGGCTCGACATCCTCGGCCAAACCCAGTCAGGAGGAAGACGACAGAGAGAGC 4020 49.58 MSQDSEEIKTIEQWKWSEMQGLELVSPSTPTGRDPEDQRGEEGAEKAKGREMESREPKVDGCGGSSGEKPETVPLVGFRELFRFADGLDYFLMALGSAGAVVHGCSLPVFLRFFADLVNSFGSNANNLDKMTQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAAWQLALVTLAVVPLIAIIGAIHATTLAKLSAKSQEALSQAGNIVEQTIVQIRVVLAFVGESRALHSYSAALKVSQRLGYRSGFAKGLGLGATYFVVFCCYALLLWYGGFLVRHHHTNGGLAIATMFSVMIGGLALGQSIPSMTAFAKAKVAAAKVLRIIDHKPAVDRNSESGLELESVTGLVELKNIDFSYPSRPDVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGCVFLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEANQLEVEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTSLVIAHRLSTIRKADLVAVLQQGIVSEIGTHDELIARGENSIYAKLIRMQETAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDISHPGYRVEKLAFKEQASSFWRLAKMNSPEWVYALLGSIGSIVCGFLSAFFAYVLSAVLSVYYNPSHSYMSREIEKYCYLLIGLSSAALLFNTQQHFFWDIVGENLTTRVREKMLGAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEASHAKATQLAGEAIANVRTVAAFNSEGQIASLFSSNLEIPLRRCFWKGQIAGSGFGVAQFLLYASYALGLWYASWLVKHGISNFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDLNATPVQDRLRGEVEFKHVDFSYPSRSDVPIFRDLTLRARSGKTLALVGPSGCGKSSVIALIQRFYEPTSGRVMIDGKDIRKYNLKSLRQHMAIVPQEPCLFGSTIYENIAYGRESATETEIIEAATLANAHKFISALPDGYKTFVGERGMQLSGGQKQRIAIARALVRKAELMLLDEATSSLDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDEGKVAEQGSHSHLLKNYPDGCYARMIQIQRFTHNQVIGIASGSTSSAKPSQEEDDRES 1340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16632389 16637512 - BLOR21453 Blo09g00538 65165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00538 1340 Gene3D ABC transporter type 1, transmembrane domain 728 1037 IPR036640 GO:0005524|GO:0016021
Blo09g00538 1340 Pfam ABC transporter 1091 1239 IPR003439 GO:0005524
Blo09g00538 1340 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 93 1315 IPR039421 -
Blo09g00538 1340 SUPERFAMILY ABC transporter transmembrane region 79 395 IPR036640 GO:0005524|GO:0016021
Blo09g00538 1340 SUPERFAMILY ABC transporter transmembrane region 736 1056 IPR036640 GO:0005524|GO:0016021
Blo09g00538 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 417 653 IPR003439 GO:0005524
Blo09g00538 1340 SMART AAA_5 1099 1291 IPR003593 -
Blo09g00538 1340 SMART AAA_5 444 636 IPR003593 -
Blo09g00538 1340 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 93 1315 - -
Blo09g00538 1340 Pfam ABC transporter transmembrane region 99 367 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00538 1340 Pfam ABC transporter transmembrane region 751 1019 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00538 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1065 1311 IPR027417 -
Blo09g00538 1340 MobiDBLite consensus disorder prediction 34 58 - -
Blo09g00538 1340 Pfam ABC transporter 435 584 IPR003439 GO:0005524
Blo09g00538 1340 Gene3D - 1061 1312 IPR027417 -
Blo09g00538 1340 Gene3D - 407 657 IPR027417 -
Blo09g00538 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00538 1340 ProSitePatterns ABC transporters family signature. 1211 1225 IPR017871 GO:0005524
Blo09g00538 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1072 1308 IPR003439 GO:0005524
Blo09g00538 1340 CDD ABC_MTABC3_MDL1_MDL2 1072 1311 - -
Blo09g00538 1340 CDD ABC_6TM_Pgp_ABCB1_D2_like 738 1054 - -
Blo09g00538 1340 CDD ABC_6TM_Pgp_ABCB1_D1_like 93 378 - -
Blo09g00538 1340 CDD ABC_MTABC3_MDL1_MDL2 417 656 - -
Blo09g00538 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 749 1036 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00538 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 656 IPR027417 -
Blo09g00538 1340 Gene3D ABC transporter type 1, transmembrane domain 80 670 IPR036640 GO:0005524|GO:0016021
Blo09g00538 1340 Gene3D ABC transporter type 1, transmembrane domain 1038 1316 IPR036640 GO:0005524|GO:0016021
Blo09g00538 1340 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524
Blo09g00538 1340 MobiDBLite consensus disorder prediction 19 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00872 Blo-Chr3:34541574 Blo09g00538 Blo-Chr9:16632389 0 dispersed
Blo06g00758 Blo-Chr6:30880134 Blo09g00538 Blo-Chr9:16632389 1.10E-100 dispersed
Blo09g00538 Blo-Chr9:16632389 Blo18g00361 Blo-Chr18:3808264 0 dispersed
Blo16g00541 Blo-Chr16:22316728 Blo09g00538 Blo-Chr9:16632389 6.94E-19 dispersed
Blo09g00538 Blo-Chr9:16632389 Blo07g01389 Blo-Chr7:33963366 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00538 K05658 - jre:109021322 2259.18