Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00550 ATGGGAAGGAAGGGAAACTGGTTTTCTTCTGTAAAGAAAGCTCTCAGCCCTGAGAAGAAAGATCAGCTTCAATTATTCCAAAATTCCAAGTGGAAGAAGAAATGGTTCGGAAAACAAAAGCTGTCCGATCCAGAATCTGCACCCCCGGAAAATGTCACCGCCCCTCCTCCTCCTCCTCCTCCTCCCCTGGTGGAAGATGTGAAATTAAGAAATGTTGTCGACGAAGAGAGTGATCGTGCTTGCTCTGTTGAAGTTCCTACTCCAACAGTGACAACCTCAGCTGCCGAAGCCCAAGTTGTTGCCACTGAGGATGTTCCAGACATTATCCAGCCTGCCCCGGAAGCTCAATTTATCGGAAAATCGAGGGAAGAAGTGGCGGCAATCAAGATCCAAACGGCATTTCGAGGATATCTGGCAAGAAGAGCATTGCGGGCTTTAAGAGGGTTGGTGAGGCTTAAAACACTGATGGAAGGTTCGGTCGTGAAGCGCCAAACTGCAAATACTCTTCGATGCATGCAAACCCTTTCTCGAGTTCAGTCTCAAATCCGTTTCAGGAGGATCCAGATGCTAGAAGAGAATCAAGCTCTTCAAAAGCAACTTCTTCAAAAACACGCCAAAGAGCTCGAGAATTTTCGGATGGGGGAGGAATGGGATGACAGCTTGCAGTCAAAGGAGCAAATTGAAGCTAATCTACTAAGCAAATATGAGGCTGCTATGAGAAGAGAGAGAGCATTGGCTTATTCATTCTCCCATCAGCAAACCTGGAAAAATTCTTCAAGATCTGTAAATCCAATGTTTATGGATCCAAGCAATCCCACCTGGGGTTGGAGCTGGTTAGAACGATGGACGGCAGCGCGGCCATGGGAGAGTCGGACAGAAAAGGAGCAGAATAACGAAAACTCATCTGTAAAGAGCGGAAGGCGTGGCATTTCTGCGGGAGAAATAAGCAAGGCTTATACTAAATACCAACTAAATGCCGAGACAAACTCCCCGACGGCTAGTGTAAAGGCAAACAATTCAACTTTCGAGTCCCCTTCGACTCCTTCCAAGCCTGCATTGCCTGCATCGACTAGAAAAATGAAGCCCCCCAGCCCAAGAAGGAGCTTGGGTCTAGAAGATGACACGAAGAGCATAGCTAGTTTGCAGTCAGAACGGGGTCGGAGGCATAGCATGGGTGCGGGATCAGTGAGGGACGATGAGAGCATAGCTAGCTCCACGGCAGTGCCTAGCTACATGACCCCAACCGAATCTGCAAGAGCCAAATCCAAATCGCAAAGCCCTTTCGCGATAGACAAGGCCGAAACGGCAGAAAAAGGATCACCAATCCCCACTAAGAAGCGACTTTCATTTACGACTTCGCCTGCCCTCCCAAGGCGGCACTCGGGTCCGCCCAAGATCGAAAGCAGCTTCAATTCAGAAGCCCAAGTAAGCAACGGTGTAACCGCGTAA 1449 48.79 MGRKGNWFSSVKKALSPEKKDQLQLFQNSKWKKKWFGKQKLSDPESAPPENVTAPPPPPPPPLVEDVKLRNVVDEESDRACSVEVPTPTVTTSAAEAQVVATEDVPDIIQPAPEAQFIGKSREEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGSVVKRQTANTLRCMQTLSRVQSQIRFRRIQMLEENQALQKQLLQKHAKELENFRMGEEWDDSLQSKEQIEANLLSKYEAAMRRERALAYSFSHQQTWKNSSRSVNPMFMDPSNPTWGWSWLERWTAARPWESRTEKEQNNENSSVKSGRRGISAGEISKAYTKYQLNAETNSPTASVKANNSTFESPSTPSKPALPASTRKMKPPSPRRSLGLEDDTKSIASLQSERGRRHSMGAGSVRDDESIASSTAVPSYMTPTESARAKSKSQSPFAIDKAETAEKGSPIPTKKRLSFTTSPALPRRHSGPPKIESSFNSEAQVSNGVTA 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16793475 16795520 + BLOR21465 Blo09g00550 65177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00550 482 MobiDBLite consensus disorder prediction 328 353 - -
Blo09g00550 482 MobiDBLite consensus disorder prediction 365 383 - -
Blo09g00550 482 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Blo09g00550 482 MobiDBLite consensus disorder prediction 49 63 - -
Blo09g00550 482 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 478 - -
Blo09g00550 482 Gene3D iswi atpase 120 159 - -
Blo09g00550 482 SMART iq_5 122 144 IPR000048 GO:0005515
Blo09g00550 482 MobiDBLite consensus disorder prediction 399 424 - -
Blo09g00550 482 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
Blo09g00550 482 MobiDBLite consensus disorder prediction 465 482 - -
Blo09g00550 482 MobiDBLite consensus disorder prediction 1 22 - -
Blo09g00550 482 MobiDBLite consensus disorder prediction 34 63 - -
Blo09g00550 482 MobiDBLite consensus disorder prediction 288 309 - -
Blo09g00550 482 MobiDBLite consensus disorder prediction 328 482 - -
Blo09g00550 482 PANTHER IQ-DOMAIN 5-RELATED 1 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00550 - - - qsu:111993140 536.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g01409 Blo09g00550 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00550 Blo-Chr9:16793475 Blo13g00730 Blo-Chr13:30127523 2.63E-139 dispersed
Blo12g00275 Blo-Chr12:16552268 Blo09g00550 Blo-Chr9:16793475 4.79E-31 dispersed
Blo09g00025 Blo-Chr9:290840 Blo09g00550 Blo-Chr9:16793475 1.73E-33 transposed
Blo16g00006 Blo-Chr16:433825 Blo09g00550 Blo-Chr9:16793475 1.04E-32 transposed
Blo07g01409 Blo-Chr7:34116855 Blo09g00550 Blo-Chr9:16793475 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00730 CCT,ECH 65 305 IQD Protein Family AT3G09710 50.8 6.9e-56 215.3
Blo09g00550 BCT 1 468 IQD Protein Family AT5G03040 50.3 7.4e-103 371.3
Blo13g00730 CCT,ECH 1 466 IQD Protein Family AT3G52290 51.1 1.1e-95 347.4
Blo03g01027 . 10 361 IQD Protein Family AT3G22190 57.0 4.0e-79 292.4
Blo01g01460 BCT 1 439 IQD Protein Family AT2G26180 60.9 4.6e-120 428.3
Blo12g01017 BCT 1 431 IQD Protein Family AT2G26180 60.9 1.8e-119 426.4
Blo18g00281 . 414 674 IQD Protein Family AT2G26180 56.3 6.8e-63 238.4
Blo03g01027 . 41 212 IQD Protein Family AT2G26180 61.7 1.1e-41 167.9
Blo16g00006 . 1 274 IQD Protein Family AT2G33990 52.5 5.6e-63 238.0
Blo07g00960 . 83 287 IQD Protein Family AT3G15050 54.1 3.6e-54 208.8
Blo02g00186 . 1 502 IQD Protein Family AT4G00820 50.4 1.5e-110 397.1
Blo05g00074 BCT,CCT,ECH 1 378 IQD Protein Family AT3G16490 50.9 1.0e-68 257.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006173 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00550 Blo_Chr09 FPKM 2.235905 3.171583 4.875969 4.786142 4.535866 4.819172 7.228831 6.227461 5.743762 7.046991