Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00560 ATGCCGAGGAAGGGGATGAGAAGCATCTGCTTCAACCCTCGAACCCTCTCCTCCGCTGGACCTTCCACTTCTCGTCTCACTTTATTTTCCGACTCTATGATCGACCAGAGCGTCGATTCCGCCGCGGAAATTATCATGAAATGGAACCCCGATTCTTCTCCTTATGCAAGAGTTACATCCATGTTTTACGAGGATAAAAGGGAAGCTCTTAAATTCATCGACTGTGTTAACGATCTTCAAAAATCCATGGATTTGTTAGTTTCCGGTGATTCACGTTCTGAGAAACTTGTTTATGCTCAGAGTCTGATGCAAATCGCCATGAAAAGACTTCAGAAAGAGTTCTACCAGATTCTCTCCACCAACCGGGCCCTTCTCGACCCTGAAGCCGTCTCTGCACGATCCTCCCGCTGCTCCACCGCATCCAGCATCTGCACTTCCACCGACGACGACGAAATCAGAGTAGCCGCTGATTCCATCTCACAAGTAGAGGAGGTTTCTTGTATTGCCATGGAGGATCTCAAATCCATTGCCGACTCTATGATCACCTCCGGCTACGCAAAAGAATGCGTCAGCATTTATAAAATCATCAGAAAATCGATCATCGACGAAGGGATATATCGTCTAGGCATTGAGAAATCCAGCTTTTCTCAAATCCACAAAGTGGCTTGGGATGTCCTTAATCTTAGAATAAGAAACTGGTTGGACGCCATTAAAATCGCAATGAAAACTCTTTTCAACGGGGAGAGGATTCTCTGCGATCACGTTTTCGCGGCGTCGGAATACATAAGAGAATCGGTTTTCGCCGATATTTCGAAAGAAGGTGCTTTACTTCTCTTTAAATTCCCTGAACTGGCCGCGAAAGGAAAGAAATCTCCAGAAAAGGTTTTCCGTTTGCTCGATATGTACACCGCCATCGCCGAGAACTGGCCGGAGATCGAATCCAGGTTCTCATTTGACTCAACCTCCGTCTTCCGATTCCAGGCTCTCACCTCGCTCACTAAACTCGGTGAGTCCGTGTGCGTAGTGATATCTGATTTCGAATTGTCAATTCAGAAAGAGCCCTCGACATCACTTGTCGCCGACGGCGGAGTCCACCCTTTGACTATTTCCACAATGAATTATCTCTCTCTTCTCGGTGATTATAGCATCATTCTCACTCAATTTTTTTCTTACTGGAATTTGCCGGAAAAATCATCGCTCCCAGATTCCTATTTTGACGGTCCAGATTTCGACGACTCGTCGAAAAATTCCATCTCCTTCCGCCTAGCATGGCTCATCCTTGTCCTCCTCTGTAAACTCGACGGTCACGCAGAGAAGTACAAAGACGTCTCATCGTCTTACATTTTCCTGGCAAACAATCTGCAGTACGTCGTCTCTAAAGTCCGATCGTCGAACCTTAAGTACATCCTTGGAGACGACTGGATGGCAAAGCATGAAGCGAAAGTGAAGCAGTTTTCAATGAATTACGTGCGGCTGGCGTGGGGTGGAGTTTTCTCATCGTTGCCCGAGAATCCGACAACGAATAGATCGGAAGCAGAAGCAAAGAAGGTCATGAGGAACTTTAACCAGGCTTTCGAACAAACGTATCGAAAGCAAAGTTTAAACGTCATACCCAACTCAGAACTCCGCGACAAAATCAAGGTTTCCATTGCGGAAAAGATAATCCCAGTTTATCGGGAGCTCTGCGATTGCCATAATATCAGTTTAAGATCGGAGAGAAGGTCAGAGAATTACGCCAAACATACCCCAGAAAATATCGGGAATTACTTGTCAGATCTCTTCTTCCTACCAACTTCGTCAGGAAGCACGTCGACGTCGTCATCTCGTCAGAGGCATTCTTGTTCGTCCCGATGA 1854 46.28 MPRKGMRSICFNPRTLSSAGPSTSRLTLFSDSMIDQSVDSAAEIIMKWNPDSSPYARVTSMFYEDKREALKFIDCVNDLQKSMDLLVSGDSRSEKLVYAQSLMQIAMKRLQKEFYQILSTNRALLDPEAVSARSSRCSTASSICTSTDDDEIRVAADSISQVEEVSCIAMEDLKSIADSMITSGYAKECVSIYKIIRKSIIDEGIYRLGIEKSSFSQIHKVAWDVLNLRIRNWLDAIKIAMKTLFNGERILCDHVFAASEYIRESVFADISKEGALLLFKFPELAAKGKKSPEKVFRLLDMYTAIAENWPEIESRFSFDSTSVFRFQALTSLTKLGESVCVVISDFELSIQKEPSTSLVADGGVHPLTISTMNYLSLLGDYSIILTQFFSYWNLPEKSSLPDSYFDGPDFDDSSKNSISFRLAWLILVLLCKLDGHAEKYKDVSSSYIFLANNLQYVVSKVRSSNLKYILGDDWMAKHEAKVKQFSMNYVRLAWGGVFSSLPENPTTNRSEAEAKKVMRNFNQAFEQTYRKQSLNVIPNSELRDKIKVSIAEKIIPVYRELCDCHNISLRSERRSENYAKHTPENIGNYLSDLFFLPTSSGSTSTSSSRQRHSCSSR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16882125 16883978 - BLOR21475 Blo09g00560 65187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00560 617 Pfam Exo70 exocyst complex subunit 231 592 IPR046364 GO:0000145|GO:0005546|GO:0006887
Blo09g00560 617 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 21 606 - -
Blo09g00560 617 SUPERFAMILY Cullin repeat-like 45 594 IPR016159 -
Blo09g00560 617 Gene3D Exocyst complex component Exo70 58 600 - -
Blo09g00560 617 PANTHER EXOCYST COMPLEX PROTEIN EXO70 21 606 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00560 K07195 EXOC7, EXO70; exocyst complex component 7 - jre:108988422 735.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01115 Blo-Chr3:37636722 Blo09g00560 Blo-Chr9:16882125 0 dispersed
Blo04g00295 Blo-Chr4:2282367 Blo09g00560 Blo-Chr9:16882125 4.44E-178 dispersed
Blo09g00560 Blo-Chr9:16882125 Blo14g00136 Blo-Chr14:975521 0 dispersed
Blo09g00560 Blo-Chr9:16882125 Blo07g01191 Blo-Chr7:31777476 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00674 . 4 642 EXO70 exocyst subunit family AT5G03540 75.8 5.6e-277 950.3
Blo01g01242 . 1 628 EXO70 exocyst subunit family AT5G03540 72.3 6.0e-263 903.7
Blo01g01242 . 1 626 EXO70 exocyst subunit family AT5G52340 79.2 1.3e-286 982.2
Blo13g00674 . 6 642 EXO70 exocyst subunit family AT5G52340 73.3 2.4e-269 924.9
Blo01g01242 . 139 628 EXO70 exocyst subunit family AT5G52350 61.8 2.6e-169 592.4
Blo13g00674 . 141 636 EXO70 exocyst subunit family AT5G52350 58.5 7.1e-159 557.8
Blo14g00063 . 1 630 EXO70 exocyst subunit family AT5G58430 66.7 1.4e-250 862.4
Blo14g00063 . 1 629 EXO70 exocyst subunit family AT1G07000 50.2 9.8e-172 600.5
Blo01g00176 . 54 647 EXO70 exocyst subunit family AT5G13150 50.3 2.0e-162 569.7
Blo06g00756 BCT 8 608 EXO70 exocyst subunit family AT1G72470 63.6 3.8e-214 741.5
Blo05g00033 BCT 7 607 EXO70 exocyst subunit family AT1G72470 61.0 1.8e-200 696.0
Blo06g00756 BCT 9 606 EXO70 exocyst subunit family AT1G54090 62.2 6.5e-211 730.7
Blo05g00033 BCT 7 605 EXO70 exocyst subunit family AT1G54090 59.8 3.8e-203 704.9
Blo06g00756 BCT 2 607 EXO70 exocyst subunit family AT3G14090 62.7 2.3e-216 748.8
Blo05g00033 BCT 2 606 EXO70 exocyst subunit family AT3G14090 61.0 1.7e-206 716.1
Blo16g00265 . 13 648 EXO70 exocyst subunit family AT5G50380 60.9 2.4e-222 768.8
Blo04g01171 . 13 650 EXO70 exocyst subunit family AT5G50380 60.4 3.0e-217 751.9
Blo15g00211 . 13 639 EXO70 exocyst subunit family AT5G50380 56.7 2.2e-199 692.6
Blo12g01102 . 3 674 EXO70 exocyst subunit family AT4G31540 69.3 1.5e-280 962.2
Blo01g01340 . 1 666 EXO70 exocyst subunit family AT4G31540 69.7 6.8e-278 953.4
Blo04g00295 . 42 633 EXO70 exocyst subunit family AT3G55150 50.5 4.8e-161 565.1
Blo07g01191 . 32 609 EXO70 exocyst subunit family AT3G55150 50.7 3.5e-159 558.9
Blo14g00136 BCT 10 602 EXO70 exocyst subunit family AT3G55150 50.5 8.0e-156 547.7
Blo07g01191 . 32 609 EXO70 exocyst subunit family AT2G39380 51.5 9.4e-165 577.4
Blo04g00295 . 22 633 EXO70 exocyst subunit family AT2G39380 50.4 1.6e-164 576.6
Blo07g01191 . 1 615 EXO70 exocyst subunit family AT3G09520 55.2 6.6e-179 624.4
Blo09g00560 . 1 617 EXO70 exocyst subunit family AT3G09520 52.7 2.0e-167 586.3
Blo14g00136 BCT 11 603 EXO70 exocyst subunit family AT5G59730 53.1 2.0e-167 586.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007378 1 1 2 1 2 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00560 Blo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0