Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00044 ATGTACGGACTGAATCCGGCGGGAAACGGGTCTCAATTAGGGCAGCAGCCGGAATGGAGTGCGGGCGGAGGCGAAACGGGCCTAGAAGAATCTATGTGGCATTTGGGGCTGACAAGTAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTGTATTATATGCGAACTGGGTTCTGTGGATATGGAAGCAGATGCCGTTTCAATCATCCTCCTGACCGTGATGCGGTCGCAGCAGCTGTAAGAGCTTCTGGGGATTACCCAGAACGAATAGGGGAACCTGTATGCCAGTATTATTTAAAAACTGGGGCGTGTAAATTTGGGGCATCCTGTAAGTTTCACCATCCAAAACATGGAGGTGGATCCCTTAGCCAGGCTCCTCTTAATAACTATGGATACCCGCTTCGACTGAGCGAAAGAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTCGGTCTAACTTGTAAATTCCACCATCCTCAACCAGCTGGCTCATCCACACCAGCCGCTGCACCTCAGTTTTATCCACCAGTGCAGTCTCCTTCAGTTCCTATGCCCGACCAATATGGAGTGGTATCCACTAGCTTGAGGGTAGCCCGGCCACCTCTTTTACCTGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTACTTCCCCCAGGAGTCGTTCCAATTCAAGGATGGAGTCCTTATTCGGCACCTGTAAGCCCTGCATTATCTCCTGGTGCTCAACCCTCAGTTGGAGCATCTTCTGTTTATGGCGTAGCCCAGTTGTCTTCTACAACACCATCTCTTCCAAGACCTTATCCCTCTTTACCATTGTCGCTTCGTCCTTCCAGCAGTAATCAAAGGGAACAGCTGTTTCCGGAGAGACCTGGTGAACCAGAATGCCAATATTACATAAGAACTGGTGATTGCAAGTTTGGGTCAGCTTGCCGATATCATCATCCTCACAATCGAATTGTACCAAGGACAAATTGTGTTCTTAGCCCACTTGGCCTTCCCTTGCGACCGGGGGTGCAGGCTTGCACATTTTACTTGCAAAATGGGCACTGCAAATTCGGATCAACCTGTAAATTTGATCATCCGATAGGGACAATGAGATACAATCCGTCAGCCTCGTCTCTCATTGACATGCCTGTTGCTCCTTATCCTGTGGGGTCTCTGCTGGCCACTTTGGCTCCTTCATCCTCTTCTTCAGAGCTGATGTCAGGGTCAAGGAAAGAATCATATTCAGCTAGATTGCCTTCTTCTGGCAATACGTCTAGTAGTGCAGTTGGTTTAATTTACTCTCAGACTGGATCTGATGTTCAACTTTCTAGCCAAAGTTCTGCTCCTTTGAACAACAACAGGAATTCTAGACAAGGTGGGGAGTCGATATGCGATGTTTCTAGCGATTTGATTATCGAAGTTGGAGCATCAAGCTTTGCACTTCACAAGTTTCCTGTAATTTCTCGTTGTGGAAGAATTCGAAAACTACTTTTGGAGGCGAAGGACTCAAAAGTTTCTCGGCTTCGTCTATCTTCCGTTCCCGGTGGACCGGAGGCGTTTGAGCTCGCTGCGAAATTCTGCTATGGAGTAAATGTTGAGATCACAAATTCAAATGTTGCTATGCTGTGTTGTATTGCACATTTTCTGGAGATGACAGATGAATTGGCTGAGAAAAACCTGAAAACAAGAACAGAAGCTTATTTAAGAGAAGAAGTATTTCCAAATATATCTAGCTCAATCTCTGTTCTTTGCTGCTGTGAAGCTCTTTGGCCTGTTTCTGATGAGATCAATTTGATAAATCAACTTATCTGTGCAATCTCCATTAACGCATGCAACGAGCAGCTTGCCTCCGGTCTACTCAAGCTCGATCATGGCTTCCCGTCACAGTCGATTTCTGACATCGAACCAGAAACGCCTCCAGATTGGTGGGGGAAGTCACTGACAAGTCTCAATCTTGGTTTCTTCCAAAGGGTTCTCTCTGCCATGAAATCTAAGGGTCTTAAAAAGGATTTGATCTGCAAAATCTTGATAAATTATGCTAAAACTTCTCTGCAAGCTGTTCCTGTGAGAGAGTATAAGTTAACCAAAGAAAGCATTTCAGATTTAGAACTGCAGAAGGAACAAAAGGCCGTTGTCGAAGCAATAGTCAGCTTACTTCCGGCCCCGTCGAGGAATAATGCGGTTCCAATGGCGTTCCTCTCGAGTTTGCTAAAAATGGTCATTGCATGTTGGGCGGATGCTTCTTTTCGATTGGATTTGGAGAGGAGGATTAGCCTCCAACTGGACCAGGCAATTCTAGAAGACATCCTAATACCTTCAAAGACAAATGGAAACAGTCTAAATTCAATGTACGACACCGAATCCGTCATAAGAATCATCACCATGTTTCTTCATCTGGACGAGGAGAGCGATGAAGACAATCAATTCCGAGATGAAAGTGAAATGGTGTGCAATTTCAACAGCCCGGAATCACCCGAGCAGAGTTCGATCTTAAAGGTTTCAAAGCTATTGGACAGTTATCTGGCTGAAATTGCTCTAGACTCTAACTTGATTCCTTCAAAATTCATCGAATTAGCAGAGCTTCTCCCGGACCATTGCCGTTTATCGAGCGATGGATTATATAAAGCTGTTGATATCTTTCTCAAAGCTCATCCCAATATTAAAGATTCAGACCGAAACCGACTTTCCAGAACTGTCGACTGTCAGAAACTATCTCAGGACTGCTGCAGCCATGCTGCCCAAAACGAACGGCTGCCGGTGCAAATGACAGTTCAAGTGCTATACTTCGAACAAATGAGGCTCAAAAATGCGATAAGCGGGGGCCAAAGCCAGCCATTCTTCAGCTCGATGAACAGCTCTAAATTCCCGCAAAGATCGTGCAGTGGCGGAGGAAGCGAAGCCATTTCTCCGAGAGATAATTATGCGTCGGTGAGACGGGAAAACCGTGAACTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTGACAGAACTGGAAAAAGACCATTTTTCAATGAAGAAAGAGCTTGTGAGGCCTAGTCCTGCTAATAAGCTGTTCAAGTCTTTCACCAGGAAGCTCAGCAAGATTAATGTTCTCTTCAGAGTCGATAGCGATCCCGAGATGAGTCGAGAATCGAAGTTTGAAAAAACTAGAATTACTCTTTTTAACTGCCTCGAGTTGGTCATCAAAGTGGTTGCAAATTGCGATAAAATTGTTTAG 3219 45.39 MYGLNPAGNGSQLGQQPEWSAGGGETGLEESMWHLGLTSRESYPERPGVPNCVYYMRTGFCGYGSRCRFNHPPDRDAVAAAVRASGDYPERIGEPVCQYYLKTGACKFGASCKFHHPKHGGGSLSQAPLNNYGYPLRLSERECSYYLKTGQCKFGLTCKFHHPQPAGSSTPAAAPQFYPPVQSPSVPMPDQYGVVSTSLRVARPPLLPGSYVQGTYGPVLLPPGVVPIQGWSPYSAPVSPALSPGAQPSVGASSVYGVAQLSSTTPSLPRPYPSLPLSLRPSSSNQREQLFPERPGEPECQYYIRTGDCKFGSACRYHHPHNRIVPRTNCVLSPLGLPLRPGVQACTFYLQNGHCKFGSTCKFDHPIGTMRYNPSASSLIDMPVAPYPVGSLLATLAPSSSSSELMSGSRKESYSARLPSSGNTSSSAVGLIYSQTGSDVQLSSQSSAPLNNNRNSRQGGESICDVSSDLIIEVGASSFALHKFPVISRCGRIRKLLLEAKDSKVSRLRLSSVPGGPEAFELAAKFCYGVNVEITNSNVAMLCCIAHFLEMTDELAEKNLKTRTEAYLREEVFPNISSSISVLCCCEALWPVSDEINLINQLICAISINACNEQLASGLLKLDHGFPSQSISDIEPETPPDWWGKSLTSLNLGFFQRVLSAMKSKGLKKDLICKILINYAKTSLQAVPVREYKLTKESISDLELQKEQKAVVEAIVSLLPAPSRNNAVPMAFLSSLLKMVIACWADASFRLDLERRISLQLDQAILEDILIPSKTNGNSLNSMYDTESVIRIITMFLHLDEESDEDNQFRDESEMVCNFNSPESPEQSSILKVSKLLDSYLAEIALDSNLIPSKFIELAELLPDHCRLSSDGLYKAVDIFLKAHPNIKDSDRNRLSRTVDCQKLSQDCCSHAAQNERLPVQMTVQVLYFEQMRLKNAISGGQSQPFFSSMNSSKFPQRSCSGGGSEAISPRDNYASVRRENRELKLEVARMRMRLTELEKDHFSMKKELVRPSPANKLFKSFTRKLSKINVLFRVDSDPEMSRESKFEKTRITLFNCLELVIKVVANCDKIV 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 418056 427872 - BLOR01834 Blo10g00044 65240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00044 1072 PANTHER OS12G0117600 PROTEIN 456 1039 IPR043454 -
Blo10g00044 1072 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Blo10g00044 1072 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 456 1039 - -
Blo10g00044 1072 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Blo10g00044 1072 SUPERFAMILY CCCH zinc finger 138 165 IPR036855 GO:0046872
Blo10g00044 1072 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Blo10g00044 1072 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Blo10g00044 1072 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Blo10g00044 1072 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Blo10g00044 1072 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 320 IPR000571 GO:0046872
Blo10g00044 1072 Gene3D - 124 171 - -
Blo10g00044 1072 Pfam BTB/POZ domain 467 554 IPR000210 GO:0005515
Blo10g00044 1072 Gene3D - 292 377 - -
Blo10g00044 1072 Gene3D - 48 123 - -
Blo10g00044 1072 SUPERFAMILY CCCH zinc finger 50 74 IPR036855 GO:0046872
Blo10g00044 1072 Gene3D Potassium Channel Kv1.1; Chain A 447 574 IPR011333 -
Blo10g00044 1072 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Blo10g00044 1072 MobiDBLite consensus disorder prediction 1 25 - -
Blo10g00044 1072 Pfam NPH3 family 641 909 IPR027356 -
Blo10g00044 1072 MobiDBLite consensus disorder prediction 264 294 - -
Blo10g00044 1072 ProSiteProfiles Zinc finger C3H1-type profile. 294 322 IPR000571 GO:0046872
Blo10g00044 1072 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Blo10g00044 1072 Coils Coil 974 1001 - -
Blo10g00044 1072 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Blo10g00044 1072 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Blo10g00044 1072 SUPERFAMILY POZ domain 465 553 IPR011333 -
Blo10g00044 1072 MobiDBLite consensus disorder prediction 401 425 - -
Blo10g00044 1072 SUPERFAMILY CCCH zinc finger 299 323 IPR036855 GO:0046872
Blo10g00044 1072 ProSiteProfiles NPH3 domain profile. 641 933 IPR027356 -
Blo10g00044 1072 SMART c3hfinal6 294 321 IPR000571 GO:0046872
Blo10g00044 1072 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Blo10g00044 1072 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Blo10g00044 1072 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Blo10g00044 1072 SMART c3hfinal6 340 367 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo05g00322 Blo10g00044 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00086 Blo-Chr1:1154513 Blo10g00044 Blo-Chr10:418056 1.22E-148 dispersed
Blo05g00322 Blo-Chr5:3673641 Blo10g00044 Blo-Chr10:418056 0 dispersed
Blo10g00044 Blo-Chr10:418056 Blo10g00591 Blo-Chr10:17657584 5.28E-143 dispersed
Blo10g00251 Blo-Chr10:3580778 Blo10g00044 Blo-Chr10:418056 1.08E-99 dispersed
Blo11g00410 Blo-Chr11:3563205 Blo10g00044 Blo-Chr10:418056 6.75E-100 dispersed
Blo12g00022 Blo-Chr12:1544529 Blo10g00044 Blo-Chr10:418056 7.49E-19 dispersed
Blo13g00338 Blo-Chr13:19554422 Blo10g00044 Blo-Chr10:418056 2.20E-70 dispersed
Blo10g00044 Blo-Chr10:418056 Blo07g00555 Blo-Chr7:15168773 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12797 PF03000 NPH3 4.30E-79 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00044 - - tcc:18613491 829.706