Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00099 ATGAGTTCGGGAGAATTAAGAGCCCTTGGGAAGAGGAATTTAGAATGGGATTTGAATGACTGGAAGTGGGATGGGGATCTTTTCATTGCTAGCTCTTTGAATTCAGTGCCATCTGCTACCCTAAGTCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGCTCGTCAAACAGCTCCTCGTCGTGCTCGGATGATGCTAATATGGGAATTGAGAAAGGGAAGAAAGAAATCGACAAAAGGAGGAGGATTACTGGGTTGGAAAATAGAGCCTTGCATGACGAAACTGGTGGGCTTATTTTAAAGCTCGGCTCTCATGGGTATCCGCTTCCTGAGAGGGAATTAGGGAGTTGGGAGGGTGGAAAGAAGACTAAATTGGTTGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAAGCTAAAGATTATCACAGGCGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGTCAGCTGCTAATGGAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGACTACTTACTAACATGCATTCGAATCAATCAGACCAAACCACCGATCAGGATCTGATATCGCATCTTTTAAGGAGCATACCCAGTCAAAGTACTGAGCTCAAGGAGAAAGACATATCTGTACATTTGCAGAATCTGCAAAATGGCATATCAGTTAGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGTGCTCAGGATCCTTCAATGCCATCAAAACAGCATGCCACTTTGCCATTGTCTGAGATACCCTCACAAGGTGTGTTTGCTCATAATTCCAGAAGTGGAGATTCACGAGCTTATTCTGAATTCAACGAGTGCTCTGCAGGGAAAAGCAAGATGAATGACTTTGATTTGAACGACATATATGTTGACTCGGATGATGGAACTGAAGATGTAGAGAGATCTGTGCTTCCTGTACATTTAGGGGTGAGTTCCCTAGAGTCTCCTTGGGCTCAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAACCTCAGAGCCGCACAGATCGTATTGTCATTAAACTATTTGGAAAAGAGCCCAGTGATTTTCCTCTCAATCTACGAGCACAGGTGCTTGATTGGTTGGCACATAGTCCGACTGACATCGAGAGCTACATTAGACCTGGTTGTGTTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGGATGAACTTTGCTATGACCTAGGTTGTGGCTTGAGCAGGCTTCTGCAAGGCTCAGATGATGCTTTCTGGAGAACAGGATGGGTTTATGTTAGAATTCAGCATCATTTAGCATTTGTTTTACATGGTCAAGTCGTGGTGGACACATCCTTAGCGCTTCGCAATAACAATTATTGTAACATTGTCAGCGTAAAACCTATTGCCGTATCTGCATCGGAGAGGATACAGTTTTCAGTTAGAGGCTCGAACTTGAAGAGGCCGGGAACGAGGTTACTCTGTGCCATTGAAGGGAAGTATCTGACTGAGGAGGTTACTCAAGAATCAACTGATTCTGTTGATACATTAAAGGAGCATAATGAGATCCAATGCATTAGCTTTTCTTGCTCTATTCCTGTAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCGGCAGTAGCTTTTTTCCATTTATAGTCGCGGAGGATGATGTATGTTCAGACATTCGTGCTCTTGAGAATGAACTGGAGTCGACTGATACGTGCTCAGACACTATGGGAGCTGCAGTAATGGGAACAAGGGTTCAAGCGTTAGATTTTATTCATGAAATGGGCTGGCTTCTTCATAGGGAACAACTGAAGTCTAGATTGAGCAATTTGAATCCAAATCCAGATCTTTACTCTTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATAGACCATGATTGGTGTGCTGTTGTGAGGAAATTATTAAACATTCTTCTTGATGGAAATGTGAATGTTGGAGATCACCTTTCGTTGAACGCTGCCTTATCTGAGATGGGTATTCTTCACCGGGCTGTAAGGAGAAACAGCAAGTCGCTTGTGGAGCTCCTTTTGAGATATAACCCCAAAAAAGTGAGATGTGAAGAAAATGTAGAGGCTGATGTAGGGGTTGAAGGCTTTTTGTTTAGGCCTGATGTTGCTGGACCTGGAGGCTTGACTCCGCTTCACATTGCAGCCGGTAAAGACGGTTCGGAAGATATCCTAGATGCATTAACCGATGATCCTGATACGGTCGGAATTGAAGCGTGGAAGAGCTCTCGAGACAGTACGGGATCCACACCCGAAGATTATGCTAACTTACGAGGCCATTTCTCGTACGGCCATCTTGTCCAGAAGAAAATCAATAAGAGGGTTACACCTGGCCATGTAGTTCTCGAAATTCCTAGTGTTCTCTCCGAATCTGTGACAAATCTTAAGCAATCCGACAGTTTGGGCAGTACCTTTGAGATCGGAACGGGCCAGCCAAGAACCCGTCTTAGGAACTGTGGGTACTGTGATAAGAAACTCACTCGCGGAAAATTGAGCAGATCTCTGGTTTACAGGCCAGCAATGTTGTCGATGGTAGCCATTGCCGCCGTTTGTGTGTGTGTGGCTCTTCTGTTCAAGAGCTTGCCGGAAGTTGTTGATTGTTTCCGGCCGTTCAGATGGGAATTGTTAGAATACGGAACGAGCTGA 2925 44.48 MSSGELRALGKRNLEWDLNDWKWDGDLFIASSLNSVPSATLSRQIFPIGTIPETGGSSNSSSSCSDDANMGIEKGKKEIDKRRRITGLENRALHDETGGLILKLGSHGYPLPERELGSWEGGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPESAANGSSSNEDQTSGYLLISLLRLLTNMHSNQSDQTTDQDLISHLLRSIPSQSTELKEKDISVHLQNLQNGISVSNSELASTFLSNGAQDPSMPSKQHATLPLSEIPSQGVFAHNSRSGDSRAYSEFNECSAGKSKMNDFDLNDIYVDSDDGTEDVERSVLPVHLGVSSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEPQSRTDRIVIKLFGKEPSDFPLNLRAQVLDWLAHSPTDIESYIRPGCVVLTIYLRQTEDAWDELCYDLGCGLSRLLQGSDDAFWRTGWVYVRIQHHLAFVLHGQVVVDTSLALRNNNYCNIVSVKPIAVSASERIQFSVRGSNLKRPGTRLLCAIEGKYLTEEVTQESTDSVDTLKEHNEIQCISFSCSIPVVNGRGFIEVEDHGFGSSFFPFIVAEDDVCSDIRALENELESTDTCSDTMGAAVMGTRVQALDFIHEMGWLLHREQLKSRLSNLNPNPDLYSLNRFKWLMDFSIDHDWCAVVRKLLNILLDGNVNVGDHLSLNAALSEMGILHRAVRRNSKSLVELLLRYNPKKVRCEENVEADVGVEGFLFRPDVAGPGGLTPLHIAAGKDGSEDILDALTDDPDTVGIEAWKSSRDSTGSTPEDYANLRGHFSYGHLVQKKINKRVTPGHVVLEIPSVLSESVTNLKQSDSLGSTFEIGTGQPRTRLRNCGYCDKKLTRGKLSRSLVYRPAMLSMVAIAAVCVCVALLFKSLPEVVDCFRPFRWELLEYGTS 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 998605 1003702 - BLOR01889 Blo10g00099 65295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00099 974 Pfam SBP domain 137 210 IPR004333 GO:0003677
Blo10g00099 974 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 973 IPR044817 GO:0003677
Blo10g00099 974 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 7 973 - -
Blo10g00099 974 MobiDBLite consensus disorder prediction 50 73 - -
Blo10g00099 974 MobiDBLite consensus disorder prediction 50 68 - -
Blo10g00099 974 Gene3D - 677 863 IPR036770 -
Blo10g00099 974 SUPERFAMILY Ankyrin repeat 697 855 IPR036770 -
Blo10g00099 974 SUPERFAMILY SBT domain 135 216 IPR036893 GO:0003677|GO:0005634
Blo10g00099 974 SMART ANK_2a 747 777 IPR002110 GO:0005515
Blo10g00099 974 SMART ANK_2a 800 830 IPR002110 GO:0005515
Blo10g00099 974 MobiDBLite consensus disorder prediction 385 422 - -
Blo10g00099 974 Gene3D - 128 198 IPR036893 GO:0003677|GO:0005634
Blo10g00099 974 MobiDBLite consensus disorder prediction 201 225 - -
Blo10g00099 974 ProSiteProfiles Zinc finger SBP-type profile. 134 211 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00099 - - - qsu:112005479 1288.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00617 Blo10g00099 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00570 Blo-Chr2:10502934 Blo10g00099 Blo-Chr10:998605 3.93E-21 dispersed
Blo07g00126 Blo-Chr7:1727193 Blo10g00099 Blo-Chr10:998605 1.01E-146 dispersed
Blo07g00193 Blo-Chr7:2401303 Blo10g00099 Blo-Chr10:998605 2.26E-22 dispersed
Blo10g00099 Blo-Chr10:998605 Blo15g00202 Blo-Chr15:2094865 1.41E-32 dispersed
Blo01g00287 Blo-Chr1:3628133 Blo10g00099 Blo-Chr10:998605 1.07E-33 transposed
Blo07g00100 Blo-Chr7:1472225 Blo10g00099 Blo-Chr10:998605 2.20E-145 transposed
Blo17g00912 Blo-Chr17:29965441 Blo10g00099 Blo-Chr10:998605 1.20E-35 transposed
Blo10g00099 Blo-Chr10:998605 Blo07g00617 Blo-Chr7:19072362 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00099 BCT 161 974 SBP-box Gene Family AT2G47070 56.9 2.2e-245 845.5
Blo07g00617 BCT 163 1012 SBP-box Gene Family AT2G47070 54.5 1.4e-239 826.2
Blo07g00126 . 3 428 SBP-box Gene Family AT2G47070 50.1 3.3e-108 389.8
Blo10g00099 BCT 10 974 SBP-box Gene Family AT3G60030 54.8 1.0e-276 949.9
Blo07g00617 BCT 2 1012 SBP-box Gene Family AT3G60030 52.1 2.1e-269 925.6
Blo07g00126 . 3 428 SBP-box Gene Family AT3G60030 50.6 2.5e-102 370.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50570 67.0 4.2e-37 152.5
Blo10g00099 BCT 161 974 SBP-box Gene Family AT2G47070 56.9 2.2e-245 845.5
Blo07g00617 BCT 163 1012 SBP-box Gene Family AT2G47070 54.5 1.4e-239 826.2
Blo07g00126 . 3 428 SBP-box Gene Family AT2G47070 50.1 3.3e-108 389.8
Blo10g00099 BCT 10 974 SBP-box Gene Family AT3G60030 54.8 1.0e-276 949.9
Blo07g00617 BCT 2 1012 SBP-box Gene Family AT3G60030 52.1 2.1e-269 925.6
Blo07g00126 . 3 428 SBP-box Gene Family AT3G60030 50.6 2.5e-102 370.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50570 67.0 4.2e-37 152.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50670 67.0 4.2e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12801 PF03110 SBP 2.70E-29 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00099 Blo_Chr10 FPKM 15.298224 17.127789 16.732941 16.993631 21.409653 19.828957 19.578959 39.337723 39.129387 37.349583