Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00112 ATGGGTCGAGGGAAGATTGAGATTAAGAAGATTGAGAATGTTAATAGTAGGCAGGTCACTTTTTCAAAGAGGCGGGCTGGGTTGCTGAAGAAGGCTCAAGAACTAGCTATTCTCTGCGACGCGGAGGTTGCTGTCATTATCTTCTCTAACACTGGAAAGCTCTTCGAGTTTTCGAGTTGCAGCATGACGCATACCCTTTCGAGATATAGCAATTGTATGGATTCTTCAGAAACTGTAATGGTAGAATACAGGGCAGAGACGCAAGATTCAGACGAGATAGACATTCTAAAAGGGGAAATTAAGAAGCTACAAACAAAACAATTAAGGCTTTTGGGCAAGGACCTGTCTGGCTTAGGCATGAAAGACTTGCAGAACCTTGAACAACAGTTAAATGAAGGGTTATCTTCAGTGAAGGAGAGAAAGGAGAAATTATTGATGGAACAACTCGAACAATCAAGGGTACAGGAACAACGAGTTATACTCGAAAACGAAACCTTGAGGAGACAGATCGAAGAGCTTCGTTGTGTTTATCCACCGACAAACTATCCGATTCAGGCATATTTTGAATCGTATTATGCGGAAAAGAAGAACTCGATCGTAGAAAATGGAGCTGCGAGCCCGGATAAGGCCTCCAACTCTGCATTTGACAAAGGAGATTCAGATACTACCTTGCATTTGGGGTATTATTATTCTCTACCATCTTCTTTGCTTTATCTTCAAAACTAA 726 41.6 MGRGKIEIKKIENVNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSCSMTHTLSRYSNCMDSSETVMVEYRAETQDSDEIDILKGEIKKLQTKQLRLLGKDLSGLGMKDLQNLEQQLNEGLSSVKERKEKLLMEQLEQSRVQEQRVILENETLRRQIEELRCVYPPTNYPIQAYFESYYAEKKNSIVENGAASPDKASNSAFDKGDSDTTLHLGYYYSLPSSLLYLQN 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1208636 1211204 + BLOR01902 Blo10g00112 65308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00112 241 PANTHER MADS BOX PROTEIN 1 231 - -
Blo10g00112 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Blo10g00112 241 Coils Coil 120 143 - -
Blo10g00112 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo10g00112 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo10g00112 241 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo10g00112 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo10g00112 241 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Blo10g00112 241 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Blo10g00112 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 231 - -
Blo10g00112 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo10g00112 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo10g00112 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo10g00112 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo10g00112 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00112 Blo-Chr10:1208636 Blo11g00002 Blo-Chr11:10151 1.42E-41 dispersed
Blo18g00105 Blo-Chr18:971128 Blo10g00112 Blo-Chr10:1208636 3.52E-30 dispersed
Blo16g00466 Blo-Chr16:18611775 Blo10g00112 Blo-Chr10:1208636 4.20E-20 transposed
Blo16g00879 Blo-Chr16:36423097 Blo10g00112 Blo-Chr10:1208636 9.69E-21 transposed
Blo10g00112 Blo-Chr10:1208636 Blo06g00910 Blo-Chr6:32381418 2.79E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12802 PF01486 K-box 1.50E-18 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00112 - - zju:107417456 318.546