Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00133 ATGGATAGTACTACGAAGTCGCCGGAGGGTGGGGAAGATCGGACGCCGACCGGAGTTCAACCGATCAAGCCTTTACCCTTCAGCAATGGCCTTTTAAAGAGGCATAATCGTCATAATCATGATAATAATCATCACAACCTCAACTCCGCCGCTAACTCCGCCGTTGTTTCCTACAAAGAATGCCTGAAAAACCATGCGGCTAGCTTAGGAGCTCACGCTTTAGATGGGTGTGGAGAATTCATACCTTCTCCTTCTGCAACTCCTTCCGATCCCAGTTCTTTCAAATGCGCCGCTTGCGGATGTCACAGGAACTTCCACCGCCGCGAGCCCGACGAGGCGATTTTCCCGGCCCCAACAACACAATTAATCGAGTACCAGCCTCACCACCGCCACCAGCCGCCTCCTCCTCCTCAGCCGATCAGCCGGAGTCCAAGTTCGGCGTCGCCTCCCCCGATCTCGTCTTCGTACTACCCCTCAGCTCCCCACATGCTTCTGGCCCTCTCGTCTGCGTTATCGGCCCCTCCGGAGCCGGCTAATCCGTTCTCGAACGGTCGGAAACGATTCAGAACCAAATTCAGCCCCGATCAGAAAGAGAAAATGCATCAGTTTGCCGAAAGAGTTGGGTGGAGGATGCAGAAGAGAGACGAAGAACTGGTTCAAGAATTCTGCAATGAAATTGGCGTGGAAAAAGGGGTTCTGAAAGTATGGATGCACAACAACAAAAACTCATCTAGCAAGAAGGACGTTAATGGCGGAACGAATACTCTAGAACTCGCTGACAATGACAACAACTTCGTCGGTAATCTGAATCGCTACGATGACGATGAAAGAGTACATCCCGCCATTAACGGGTCTTCTTCTTCGTCCTGA 870 51.61 MDSTTKSPEGGEDRTPTGVQPIKPLPFSNGLLKRHNRHNHDNNHHNLNSAANSAVVSYKECLKNHAASLGAHALDGCGEFIPSPSATPSDPSSFKCAACGCHRNFHRREPDEAIFPAPTTQLIEYQPHHRHQPPPPPQPISRSPSSASPPPISSSYYPSAPHMLLALSSALSAPPEPANPFSNGRKRFRTKFSPDQKEKMHQFAERVGWRMQKRDEELVQEFCNEIGVEKGVLKVWMHNNKNSSSKKDVNGGTNTLELADNDNNFVGNLNRYDDDERVHPAINGSSSSS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1513887 1514756 - BLOR01923 Blo10g00133 65329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00133 289 MobiDBLite consensus disorder prediction 244 289 - -
Blo10g00133 289 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 6 267 - -
Blo10g00133 289 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Blo10g00133 289 MobiDBLite consensus disorder prediction 1 47 - -
Blo10g00133 289 MobiDBLite consensus disorder prediction 127 155 - -
Blo10g00133 289 MobiDBLite consensus disorder prediction 129 146 - -
Blo10g00133 289 SUPERFAMILY Homeodomain-like 175 246 IPR009057 -
Blo10g00133 289 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 267 - -
Blo10g00133 289 MobiDBLite consensus disorder prediction 173 198 - -
Blo10g00133 289 MobiDBLite consensus disorder prediction 244 268 - -
Blo10g00133 289 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Blo10g00133 289 Gene3D - 177 247 - -
Blo10g00133 289 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Blo10g00133 289 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 185 242 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00133 - - - qsu:112022185 275.404
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo10g00133 Blo11g00585 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00133 Blo-Chr10:1513887 Blo17g00363 Blo-Chr17:3880322 7.07E-95 dispersed
Blo10g00133 Blo-Chr10:1513887 Blo11g00585 Blo-Chr11:5715242 1.64E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12805 PF04770 ZF-HD_dimer 6.00E-28 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00133 Blo_Chr10 FPKM 5.579838 7.381979 6.195709 5.903648 0.0 0.496552 0.797366 0.157634 0.0 0.328413