Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00166 ATGAGCCCGGGGTGGACACTCGGGTGGACGTGGGCAAAGAAAGAGGTCATATGGTCCATGGCCGGGGCTCAAGCCACGGAGCAAGGTGACTGCTCAAAGTTCAAAGGGAACATCCCCCATTGCTGCAAGAAGAGCCCCACAGTTGTGGACTTGCTGCCAGGAGTCCCTTACAATCAACAATTCACCAATTGCTGCAAAGGTGGAGTTGTGGCTGCTTGGGGTCAAGACCCCCAGGCTTCCGTCTCGGCCTTCCAGATAAGCGTCGGCCTTTCCGGCTCCTCGAATAAGACCGTCAAGCTCCCGAAGAACTTCACCCTGTTAGGCCCCGGTCCCGGCTACACGTGCGGGCCTGCTAAGATCGTCCCTTCCACGACCTTTCTCACCCCGGATCGTCGTCGGAAAACTCAAGCTTTGATGACATGGAACGTAACGTGCACTTATTCGCAATTTCTCGCCAGGAAAAACCCGAATTGCTGTGTTTCTTTCTCGTCTTTCTACAACGAAACTATCACCCCTTGCCCATCTTGTGCATGCGGCTGCCCAAACAAAAATAATTGTGTCAAGAGCGATGCCAAGATTCTTACGATGGTGGGAATAAATACGACGAAGAAAGACAACTCCCCTCTTCTCCAATGCACGCACCATATGTGTCCCGTTCGAGTTCATTGGCACGTCAAGCAAAACTACAAAGACTATTGGCGGGCAAAGCTCGCCATCACCAACTTCAACTATCGAAAGAACTACACGCTCTGGTCTCTCGTCGTTCAGCACCCGAATCTCAACAAAGTAACCCAAGTTTTCAGCTTTGATTACAAGTCACTCGTTCCCTACGAGTCGATAAATGACACTGGAATGTTTTATGGCATGAAATACTATAATGACCTGTTAATGGAGGCTGGACCATTTGGGAATCTTCAGTCTGAGGTGCTTCTTCAAAAGGACAAGAACACTTTCACCTTCAAGCAGGGATGGGCATTTCCTCGGAAAGTTTACTTCAACGGCGACGAATGTATGCTGCCACCACCCGACCAATACCCGTTTCTACCCAATTCTGCAGGCCAAAATCTGATCGCCTACTTCTTTTCGATCGTTTCGATGCTCTTCTTGTTCATGGCAATCTACTGA 1125 49.78 MSPGWTLGWTWAKKEVIWSMAGAQATEQGDCSKFKGNIPHCCKKSPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPQASVSAFQISVGLSGSSNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNETITPCPSCACGCPNKNNCVKSDAKILTMVGINTTKKDNSPLLQCTHHMCPVRVHWHVKQNYKDYWRAKLAITNFNYRKNYTLWSLVVQHPNLNKVTQVFSFDYKSLVPYESINDTGMFYGMKYYNDLLMEAGPFGNLQSEVLLQKDKNTFTFKQGWAFPRKVYFNGDECMLPPPDQYPFLPNSAGQNLIAYFFSIVSMLFLFMAIY 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1974172 1975595 - BLOR01956 Blo10g00166 65362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00166 374 PANTHER PROTEIN COBRA 1 370 IPR006918 GO:0010215|GO:0031225
Blo10g00166 374 PIRSF COBRA 1 374 IPR006918 GO:0010215|GO:0031225
Blo10g00166 374 Pfam COBRA-like protein 2 148 IPR006918 GO:0010215|GO:0031225
Blo10g00166 374 PANTHER COBRA-LIKE PROTEIN 1 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00166 - - - qsu:112004749 730.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01207 Blo-Chr6:35642734 Blo10g00166 Blo-Chr10:1974172 0 dispersed
Blo10g00166 Blo-Chr10:1974172 Blo15g00345 Blo-Chr15:4346480 8.26E-65 dispersed
Blo10g00164 Blo-Chr10:1961135 Blo10g00166 Blo-Chr10:1974172 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1005 Blo10g00166 . . . . . . . Cmo14g01186 Cmo01g00449 Cma11g01571 Cma14g01158 . Car14g01031 . . . . . . . . . . . . . . . . . . Cone18ag1145 . . . . . Cme07g01007 . . . . . Bpe11g01181 . . Sed06g0870 . . . . . . Cpe02g01400 . Bhi01g02251 Tan04g1898 Cmetu07g1414 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00345 . 222 643 COBRA Gene Family AT5G60920 76.5 4.6e-205 710.7
Blo10g00164 . 22 416 COBRA Gene Family AT5G60920 75.4 9.3e-198 686.4
Blo11g00321 . 63 452 COBRA Gene Family AT5G60920 74.1 1.9e-190 662.1
Blo06g01207 . 118 515 COBRA Gene Family AT5G60920 67.4 2.6e-176 615.1
Blo10g00166 . 2 370 COBRA Gene Family AT5G60920 66.1 6.9e-161 563.9
Blo10g00164 . 8 415 COBRA Gene Family AT3G02210 76.5 8.1e-203 703.4
Blo15g00345 . 209 644 COBRA Gene Family AT3G02210 70.8 1.2e-198 689.5
Blo11g00321 . 50 463 COBRA Gene Family AT3G02210 72.1 8.4e-192 666.8
Blo06g01207 . 104 501 COBRA Gene Family AT3G02210 68.2 1.4e-175 612.8
Blo10g00166 . 2 369 COBRA Gene Family AT3G02210 64.0 2.5e-151 532.3
Blo02g01204 BCT 304 714 COBRA Gene Family AT3G02210 50.8 1.6e-126 449.9
Blo10g00164 . 9 416 COBRA Gene Family AT3G29810 74.3 2.1e-195 678.7
Blo15g00345 . 209 630 COBRA Gene Family AT3G29810 71.2 4.1e-191 664.5
Blo11g00321 . 50 455 COBRA Gene Family AT3G29810 73.7 5.3e-191 664.1
Blo06g01207 . 101 517 COBRA Gene Family AT3G29810 65.4 1.6e-174 609.4
Blo10g00166 . 2 369 COBRA Gene Family AT3G29810 64.2 5.4e-151 531.2
Blo02g01204 BCT 304 700 COBRA Gene Family AT3G29810 53.7 4.1e-127 451.8
Blo06g01207 . 103 425 COBRA Gene Family AT5G15630 84.9 7.5e-177 616.7
Blo10g00166 . 2 281 COBRA Gene Family AT5G15630 83.6 4.6e-150 527.7
Blo11g00321 . 51 371 COBRA Gene Family AT5G15630 69.6 1.3e-144 509.6
Blo15g00345 . 210 553 COBRA Gene Family AT5G15630 68.2 4.2e-143 504.6
Blo10g00164 . 8 333 COBRA Gene Family AT5G15630 67.0 3.0e-141 498.4
Blo10g00164 . 18 198 COBRA Gene Family AT5G60950 58.6 8.2e-62 233.8
Blo11g00321 . 59 239 COBRA Gene Family AT5G60950 57.5 7.0e-61 230.7
Blo06g01207 . 114 294 COBRA Gene Family AT5G60950 58.0 1.5e-58 223.0
Blo15g00345 . 218 419 COBRA Gene Family AT5G60950 52.5 2.1e-57 219.2
Blo10g00166 . 3 149 COBRA Gene Family AT5G60950 55.1 1.7e-43 172.9
Blo02g01204 BCT 305 714 COBRA Gene Family AT1G09790 57.9 1.4e-146 516.5
Blo06g01207 . 82 496 COBRA Gene Family AT1G09790 53.7 3.5e-134 475.3
Blo10g00164 . 9 403 COBRA Gene Family AT1G09790 53.5 5.6e-132 468.0
Blo11g00321 . 50 441 COBRA Gene Family AT1G09790 53.8 2.1e-131 466.1
Blo10g00166 . 3 352 COBRA Gene Family AT1G09790 53.3 1.9e-116 416.4
Blo12g00091 BCT 31 646 COBRA Gene Family AT4G16120 64.1 9.9e-250 859.8
Blo01g00059 BCT 31 628 COBRA Gene Family AT4G16120 65.0 1.0e-246 849.7
Blo10g00811 . 38 634 COBRA Gene Family AT4G16120 57.0 1.1e-213 740.0
Blo12g00091 BCT 9 646 COBRA Gene Family AT3G16860 61.1 5.6e-237 817.4
Blo01g00059 BCT 9 639 COBRA Gene Family AT3G16860 61.5 1.5e-234 809.3
Blo10g00811 . 35 648 COBRA Gene Family AT3G16860 53.4 1.8e-203 706.1
Blo12g00091 BCT 3 634 COBRA Gene Family AT5G49270 57.9 1.0e-230 796.6
Blo01g00059 BCT 3 647 COBRA Gene Family AT5G49270 57.0 1.2e-226 783.1
Blo10g00811 . 34 647 COBRA Gene Family AT5G49270 53.5 1.8e-203 706.1
Blo10g00811 . 6 634 COBRA Gene Family AT3G20580 64.0 2.1e-255 878.6
Blo12g00091 BCT 24 628 COBRA Gene Family AT3G20580 53.9 2.5e-200 695.7
Blo01g00059 BCT 27 628 COBRA Gene Family AT3G20580 53.7 2.3e-198 689.1
Blo10g00811 . 11 657 COBRA Gene Family AT4G27110 61.1 1.2e-242 836.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00166 Blo_Chr10 FPKM 5.291156 5.933062 5.119638 4.01076 15.090189 13.279564 13.780963 9.768499 6.114833 7.488475