Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo10g00204 | ATGGCACTAGCCAAAGAACCACGCATGGGTTTAGCTCCATCTGCAGACGTGTCTTCCCAATGCTCTCATGAAAGTGCAGTAGAAATGGAAAAATATGGTGGGTTTGCAAAGAATACTGGTTTTTTGTTCCGCAGTTCGATCTACGAACCAGAAATTTCTCGGTCTGTGATAAACTTCAAGGAGCAGGTCGATCGGAACCTAGCCCATTTAAGCAGGGAACCATCTTTACTGAGTTTTGGCCAAACCCACCGGGTTGCTCCAGAAGACTATTTCAACTGGGCCGCAGAAGAAGAAAGCTTTAACAATGGCTGTCAATGGAGCCAGATGATCAGCTCTCCTAACCTACGCCTTTTGGACGACTTAAACTGCTTTCAGAAAGCTTCCAGCTTTGCTCCCATGGCGATTCCTTCCCAAGAGAATCAACATGGATCAGATGGGTCCAGTAATTATTGGCTATATTCTGAAGAATCAGATGCTATTGGTGAAGAGGAGTCAAGAACTGCTCTTGAACTAACCCCACAGAAACGACCCCATCTGGGGGATACCGAGCAAACTACGAAGAAACAATGCAATAGTTCAACTAAGAAGACAAAACCTAAGACAAATCCAACAAAAGATCCGCAAAGTATAGCAGCAAAGAATCGACGAGAGCGGATTAGCGAGAGATTGAAGATTCTGCAAGAACTAGTTCCCAATGGATCCAAGGTTGATTTGGTTACTATGCTGGAGAAAGCAATTAGCTACGTCAAATTTCTGCAGCTTCAAGTAAAGATATTGGCGACAGATGAATTCTGGCCAGTTCAAGGAGGGAAAGCTCCTGATATTTCTCAGGTGAGAGAAGCCATTGATGCAATTCTTTTTTCACAAAGAGAGAGAAGCTCCAGCTCAAACAGTACAAAGTAA | 903 | 43.85 | MALAKEPRMGLAPSADVSSQCSHESAVEMEKYGGFAKNTGFLFRSSIYEPEISRSVINFKEQVDRNLAHLSREPSLLSFGQTHRVAPEDYFNWAAEEESFNNGCQWSQMISSPNLRLLDDLNCFQKASSFAPMAIPSQENQHGSDGSSNYWLYSEESDAIGEEESRTALELTPQKRPHLGDTEQTTKKQCNSSTKKTKPKTNPTKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVREAIDAILFSQRERSSSSNSTK | 300 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2582902 | 2584324 | - | BLOR01994 | Blo10g00204 | 65400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo10g00204 | 300 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 202 | 261 | IPR036638 | GO:0046983 | |
| Blo10g00204 | 300 | SMART | finulus | 209 | 258 | IPR011598 | GO:0046983 | |
| Blo10g00204 | 300 | MobiDBLite | consensus disorder prediction | 162 | 183 | - | - | |
| Blo10g00204 | 300 | MobiDBLite | consensus disorder prediction | 162 | 215 | - | - | |
| Blo10g00204 | 300 | MobiDBLite | consensus disorder prediction | 184 | 209 | - | - | |
| Blo10g00204 | 300 | Gene3D | - | 197 | 260 | IPR036638 | GO:0046983 | |
| Blo10g00204 | 300 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 21 | 293 | - | - | |
| Blo10g00204 | 300 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 21 | 293 | - | - | |
| Blo10g00204 | 300 | Pfam | Helix-loop-helix DNA-binding domain | 210 | 253 | IPR011598 | GO:0046983 | |
| Blo10g00204 | 300 | CDD | bHLH_AtIND_like | 205 | 266 | - | - | |
| Blo10g00204 | 300 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 203 | 252 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo10g00204 | Blo-Chr10:2582902 | Blo18g00720 | Blo-Chr18:17979927 | 8.01E-25 | dispersed | |
| Blo10g00204 | Blo-Chr10:2582902 | Blo11g00365 | Blo-Chr11:3088018 | 9.84E-155 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 12810 | PF00010 | HLH | 9.70E-08 | No_clan | Blo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo10g00204 | - | - | tcc:18601899 | 257.684 |