Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00251 ATGGAAGGCGGGCCATATCCCGAGCGTCAAGGAGAGCCAGATTGTTCTTATTACATCAGAACCGGCATATGTAGATTCGGAGCAACATGCCGTTTTAACCATCCTCCCGATAGAAAGCTGGCTATTGCTACTGCAAGGATGAAGGGGGAATATCCCGAGAGAATCGGACAGCCGGAATGCCAGGCATTCATATTTATGAAATTTTTGTTTGAAAAGTGTTGTTACTACCTGAAGACTGGAACCTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGATATCCGCTTCGCCCGAACGAGATTGAATGTGCTTATTATTTAAGAACTGGGCTGTGCAAATTCGAAAGTACATGTAAATTCCATCACCCTCAGCCATCTAATATGATGATTCCCTTACGCGGTTCTCCTGTTTATCCGACCGTCCAGTCTCCAACTACTAGCCAACAGTCGTATCAAGGAGAAATTACAAATTGGTCAAGAGCGTCTTTTATTCCCAGTCCAAGATGGCAAGGCCCCTCTAGTTATGCACCCGTTATTCTACCGCAAGGACTAGTTTCTGTTCAAGGTTGGAATGCATACAGTGGAATCGTTAAGTACAAAAAGTTCTTGAAATTATTAGGTCCTCTCGGATCGGTTTCTTCTTCAAAGAGTCAGCAGCAAACATCGACAATTAGTCAGGTTTATGGAGCTTCACGTCAAAATGAATCTGGTAGTTTAGTCCCTGAAGTACCATTTTCTCCATTTCGTTCTGGCTCTGTTCCTGTTGGGTACTATGCATTGCAGAGGGACAATGTATTCCCCGAGCGACCTGGTGAGCCTGAGTGTCAGTTTTACATGAAAACTGGTGATTGCAAATTTGGTTTAGTATGTCGATTCCACCATCCGAGAGAGAGATTACTACCGGCTCCAGACTGTGTTTTGAGCTCCATCGGCCTTCCCTTACGTCCGGGAGAACCTTTATGCCTCTTCTATTCTCGTTATGGTATCTGCAAGTTCGGTCCAAGCTGCAAATTCGACCACCCGATGAGAATCTTCTCATACAATGTTCCCGCATCACAGTCGTCGGATTTGTCAGTTCGTCGTTTATTAGGTTCATCGTCGGGAGCATCAGCTCTAAATTTGTCCCCCGAAGGACTGATTGAAGCAGGTCCTACAAAGCCGAGGAGGCTCTCACTATCTGAGAGCAGACAGATGTCTTCTAGTGGCGATAATATTGACACAGATGAATGA 1278 44.84 MEGGPYPERQGEPDCSYYIRTGICRFGATCRFNHPPDRKLAIATARMKGEYPERIGQPECQAFIFMKFLFEKCCYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPNEIECAYYLRTGLCKFESTCKFHHPQPSNMMIPLRGSPVYPTVQSPTTSQQSYQGEITNWSRASFIPSPRWQGPSSYAPVILPQGLVSVQGWNAYSGIVKYKKFLKLLGPLGSVSSSKSQQQTSTISQVYGASRQNESGSLVPEVPFSPFRSGSVPVGYYALQRDNVFPERPGEPECQFYMKTGDCKFGLVCRFHHPRERLLPAPDCVLSSIGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMRIFSYNVPASQSSDLSVRRLLGSSSGASALNLSPEGLIEAGPTKPRRLSLSESRQMSSSGDNIDTDE 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3580778 3583245 - BLOR02041 Blo10g00251 65447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00251 425 PANTHER PROTEIN PHOSPHATASE RELATED 1 424 - -
Blo10g00251 425 ProSiteProfiles Zinc finger C3H1-type profile. 331 359 IPR000571 GO:0046872
Blo10g00251 425 ProSiteProfiles Zinc finger C3H1-type profile. 9 37 IPR000571 GO:0046872
Blo10g00251 425 SUPERFAMILY CCCH zinc finger 334 358 IPR036855 GO:0046872
Blo10g00251 425 ProSiteProfiles Zinc finger C3H1-type profile. 67 95 IPR000571 GO:0046872
Blo10g00251 425 MobiDBLite consensus disorder prediction 406 425 - -
Blo10g00251 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 358 IPR000571 GO:0046872
Blo10g00251 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 94 IPR000571 GO:0046872
Blo10g00251 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 36 IPR000571 GO:0046872
Blo10g00251 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 312 IPR000571 GO:0046872
Blo10g00251 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 118 140 IPR000571 GO:0046872
Blo10g00251 425 Gene3D - 284 370 - -
Blo10g00251 425 Gene3D - 72 148 - -
Blo10g00251 425 Gene3D - 7 71 - -
Blo10g00251 425 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 1 424 - -
Blo10g00251 425 SUPERFAMILY CCCH zinc finger 116 141 IPR036855 GO:0046872
Blo10g00251 425 ProSiteProfiles Zinc finger C3H1-type profile. 113 141 IPR000571 GO:0046872
Blo10g00251 425 SMART c3hfinal6 113 140 IPR000571 GO:0046872
Blo10g00251 425 SMART c3hfinal6 67 94 IPR000571 GO:0046872
Blo10g00251 425 SMART c3hfinal6 9 36 IPR000571 GO:0046872
Blo10g00251 425 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Blo10g00251 425 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Blo10g00251 425 SUPERFAMILY CCCH zinc finger 66 96 IPR036855 GO:0046872
Blo10g00251 425 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Blo10g00251 425 MobiDBLite consensus disorder prediction 392 425 - -
Blo10g00251 425 SUPERFAMILY CCCH zinc finger 289 315 IPR036855 GO:0046872
Blo10g00251 425 SUPERFAMILY CCCH zinc finger 14 37 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00251 Blo-Chr10:3580778 Blo10g00044 Blo-Chr10:418056 1.08E-99 dispersed
Blo10g00251 Blo-Chr10:3580778 Blo11g00410 Blo-Chr11:3563205 5.90E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12813 PF00642 zf-CCCH 1.60E-09 CL0537 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00251 - - qsu:112012560 659.448