Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00270 ATGTTGACTCCCATGGCAACTCCTGGAGACCCTGGCCTTACTCCAAAAAGTGGTATGACACCATCTAGGGATGGTTATATCTTTGGAATGACTCCAAAGGGCACTCCAATCAGGGATGATCTACATATCAATGAAGACATGGATATTCATGATAATGCTAAACTTGAGCTAAGGAGACAAGCTAATTTGAGGAGGAATTTATGTTTAGGTTTGAGCGATCTTCCACAGCCCAAGAATGAGTATCAAATAGTTATGCAACCAGTTCCAGAAGATAATGAGGAACCAGAGGAGAAAATAGAGGAGGTTATGTCGGATAGGATTGCTGAGGAAGAAGCGCGACAGCAAGCATTACTTAGGAAGAGATCTAAAGTACTTCAGCGAGAGCTTCCCAGACCTCCTCTTGCTTCATTGGAACTGATTAGGAATTCTTTAATGAGAGCTGATGGGGACAAGAGCTCTTTTGTTCCTCCTACATCCATTGAGCAGGCTGATGAAATGATTACGAAGGAGATGACTGTGTATTACTTATGCATGTGCGTGTTTCCTCTGAAATTTTTTGATGCCTGGACTAAATTTTTGGTTTTTCCGCAGGCTGTTTTTTTAATAAACGATGAAGTTCGGTACCTTCGAGTAGCAATGGGACATGAGAATGAATCCCTTGATCAATTTGTTGAAGCACATAAAACTTGCCAGAATAATCTCATGTATTTCCCCTCCCGAAATGCTATGAATAATGTTAAAAAGAAAATGGATGATGATACTGAAAATGCCGTACGTATGGAGAAGAAGGTCAAAGTTCTTACACATGGTTATGAGACAAGGGCCAAAACAAGCCTATGGCCTCAAATTGAAGCTACCTTCAAGCAGATGGAAACTGCTGCAACAGAGCTCGAGTGTTTTCAAGCTTTGCACATGGAAGAGCTATTAGCTGCCTCACACAGGATTAATACTCTTAGCCAAGAAGTTCAAAAGCAAAAGGAACTTGAGCAAACCTTGCAGAGCCGATACGCAGATGTGGTAATGGAGTTAGAAAAAGCACAACGCCTCATGGATCACTACAGAGCTCAAGCAAAACAGCAAGAAGAAATTGCAGCTGAAAATGATGCCCTTACTGAAGCTACTGCCTCTGAGACGGTGGATTTATTAGTTGATGACAATGCTTTTCGACTATCTAGTACTGTTGATGTTGCCTCAGAGAAAGAACCATCGACTGTGAGTATGGATGTTGATTTGCCCGGCAATATTTCTTCTGCCGGTGAAGTGGGACCCATGAGAGTAGAACAAGAAGACCATAATGAAAATAAGCTTCCGACAGAGGAACACTTTGATAACGGCAAAAAAATCTCTGAACCAGTTGCGGGTATTGAAGACAAAATCATGCATGAGCCAGAGGACAATATTTCAACTTCCAAGGTTGAAAACGAGGATGAGCACATTGAGCAGCTTGAGCATAACGGCGACAGTGGGAACTCAAACATAGAACTGATGAAACATGATGAGCCCGCACTAAATTTGGCTGATAATGATGGATTTAGTTCAAAGCATGATGACTAG 1554 41.76 MLTPMATPGDPGLTPKSGMTPSRDGYIFGMTPKGTPIRDDLHINEDMDIHDNAKLELRRQANLRRNLCLGLSDLPQPKNEYQIVMQPVPEDNEEPEEKIEEVMSDRIAEEEARQQALLRKRSKVLQRELPRPPLASLELIRNSLMRADGDKSSFVPPTSIEQADEMITKEMTVYYLCMCVFPLKFFDAWTKFLVFPQAVFLINDEVRYLRVAMGHENESLDQFVEAHKTCQNNLMYFPSRNAMNNVKKKMDDDTENAVRMEKKVKVLTHGYETRAKTSLWPQIEATFKQMETAATELECFQALHMEELLAASHRINTLSQEVQKQKELEQTLQSRYADVVMELEKAQRLMDHYRAQAKQQEEIAAENDALTEATASETVDLLVDDNAFRLSSTVDVASEKEPSTVSMDVDLPGNISSAGEVGPMRVEQEDHNENKLPTEEHFDNGKKISEPVAGIEDKIMHEPEDNISTSKVENEDEHIEQLEHNGDSGNSNIELMKHDEPALNLADNDGFSSKHDD 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3849674 3851937 + BLOR02060 Blo10g00270 65466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00270 517 MobiDBLite consensus disorder prediction 458 517 - -
Blo10g00270 517 MobiDBLite consensus disorder prediction 1 24 - -
Blo10g00270 517 MobiDBLite consensus disorder prediction 500 517 - -
Blo10g00270 517 MobiDBLite consensus disorder prediction 458 484 - -
Blo10g00270 517 Pfam pre-mRNA splicing factor component 5 172 IPR021786 -
Blo10g00270 517 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 2 170 - -
Blo10g00270 517 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 198 450 - -
Blo10g00270 517 PANTHER - 2 170 - -
Blo10g00270 517 Coils Coil 243 263 - -
Blo10g00270 517 PANTHER - 198 450 - -
Blo10g00270 517 Coils Coil 315 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00270 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 483.796
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g605 Blo10g00270 . . . Bpe11g01310 . Bma13g00410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g03418 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00270 . 1 373 MYB-Related Transcription Factor Family AT1G09770 50.8 5.7e-93 339.3
Blo10g00270 . 1 373 MYB-Related Transcription Factor Family AT1G09770 50.8 5.7e-93 339.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00270 Blo_Chr10 FPKM 12.348073 12.577798 4.975637 6.383288 7.750837 10.325444 8.759427 1.213768 0.859708 1.015363