Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00272 ATGGGGACAAAACTTGTGACAATTTGTGTCAAAGAAGAGAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGGCATTGACATCTTTTGCTGTCCAGAATATGGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCATGCCTTCCACTAGTATTTCGGAAACACAATCCGTTCATATGGATATTAAAATGGACAGCACTCTTGATACTAAGATAACAAGGTCCCTACGGCCAAGATCATGTATTAACTATGGTCAATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGAGGGTTGAACAAAATTTCTCTTTGAAGCCTCCTCTTCCCAAGGGGGTAATTCGGGGCTGTGCAGAGTATCCTAAGTTCATCTATCCATATGTTTCTTCATTGTTTTCTTGTATTACTGTTGCTAAAACTGCTATTTTATACAACTATCAACAACTGATTACTGCAAGATGGCGTCCCACAGAGTCTTGCAGACCCGATATTGAGGATGCTCCCATTTTTTATCCGACTGAAGAGGAGTTTGAAGATACCTTGAAATATATAGCTAGTATACGTGCAAAAGCGGAACCTTATGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTGTCCTCTACAGGAACTAGTGAAATGGACAAGTTCCAAATTTTCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCCTTGAGAAAGATATCAAGGACTCAGGGCCAAATGAAGAGAAAAAGAAGAAGAAATGCACGCATGGGGGTAGATTGTTCTACGGTTGATTCTTTAATTGGAATTAAATTGAAAGAGAGTCACGAGCCATCTGTGGAAAATATTGAGGGGGAATATTGGCGAATGGTAGAGAAACCTACTGAGGAAATTGAGGTGTTATATGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTGGCCAAGCTGGTTCAACTTCAGATGAAAAATATGTAACATCGGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTACGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCGTGGCTGTATGTTGGGATGTGCTTTTCCTCCTTTTGCTGGCATGTCGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGAGTCCCAGGAAAGGATGCCTGCAAATTAGAAGCTGCAATGAAAAAGCATTTGCCTGATCTTTTTGAGGAACAACCTGATTTGCTTCATAAGCTGCTACTAAAACTATTTCATCAAATTCATTCATGTATATGCAATGTCAAATTGGAGAAACGAGTGAATAATTTCGTCACACAACTTTCCCCTTCTATATTAAAGTCTGAGGGAGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATTGCCATAGAATTATACTGTGAGCAGAGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACGTCAGATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCGAAATCACTCAAGACACGGATTGAAAGGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAGCAGCTTTGATGCCACTAACGAGAAGGAATGCAGTTTATGCCTTTTTGACTTGCACCTCTCTGCTGTTAGTTGTCCTTGTTCCCCAGATAAATACGCTTGCTTGAATCACGCGAAGGATTTCTGCTCCTGTGCTCAGGGTGCTAGAATTTTCCTCTTCCGATATGAGATTAATGAATTGAGTATCCTTGTTGAGGCTTTGGAAGGGAAACTAAGTGCAATTTATAGATGGGCTAAACTGGACCTTGGATTGGCTCTAAGTTCTCACATCTCTAAAGACAAGATGCATAATAGTAGATTAACCAAAACATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCGAGTGGTGGTTATCTTAAAGATTTAGAGTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCAAGTGGAATCACTGGTGACATCTCTTCTCAACACAACAGTGAATTAGCAGAAGATATATCAATGTTGAAGATCAAAGAATTAGTGTTGAAATCTAATGGTTTGTTAAAGGAAATTGAAAAGACGAATCATGACTTTCAGTTGAGGAAAGAAGAACACAATGGTACTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCTAAAAGACATAAAGCATTGGGCAAATCCTGTTTTGAAAATAGGAAGAGAGGATAAGGTTTCAGTTTTGAAACCCAAGGATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGAATAAAGAAAAAGAAAGTTCTTTAGCGAGACAATTAGAAGACTCTGACAGGTTGGCTGGAGCCAATACGAAGGCAAGCCTTTGCAACCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTTATGAATGGGAAGGATGTCGTTTATCGGCCTCAGAAGAAACTGAAAACTTGCTCATCTCCTGTTGTGCCAGTTAAAAATGACGACCCTCAAAAAAATAGGTCAATGTCAGGAAATGCTAGTCCAGAGAATGCCATTTGTAACCTAGATTCTCCGGAGGAATTAGGTATAAATGGTCAAGTTCTTTCAACTCAAATATGTAGTTCTGGAAAGATCGATAACGAGGATAAGGTTTGTCCTTCAAATTTTGTGGGCAATGAAAGAAGTATCCATGGAAATCTTTCTTGTTCCAAAAATAGTTTAAACAGGTACTTCAGGCAAAAGGGTCCTCGAATAGCAAAGGTAGTAAGGAGGATCAACTGTAACGTGGAGCCTTTAGAATTTGGAGTAGTGGTTTCTGGAAAGTGTTGGTCTAACAGTCTGAGAATTTTTCCTAAAGGATTTAAGAGCCGAGTCAGGTTCATAAGCGTCTTGGATCCATCGAACATGGCCTACTATGTTTCAGAGATTCTTGATGTTGGAGTAGATAGACCTCCTCTGTTCATGGTTTCGCTGGAGCAATGCCCAGATGAGGTGTTTAGTCATTTTTCACCAGCCCGTTGCTGGGAATTAGTGAGAGAGAGAGTGAATCAAGAAATCTCTAAGCATCATTTGTTAGGAAGAATGGATCTTCCTCCATTGCAGCCTCCTAAGAGTTTAGATGGTTTTGAAATGTTTGGATTCACTTCACCAGCTATTGTGCAGTTTACCATCGAAGCAATGGATCGAAATCGAGTCTGCACCGAGTATTGGGACTCACGACCTTATTCTCGGCCTCAAATACAAATGATACCTCCTTCGCAATCAATAACCATCAATAGAAATCCACAAAGAGGGTCAGAAAATAGAAACATTGACGGGCATTTTGCCGGAACTGATACAATACTCCAGGGGTTATTCAAGAAGGCAAATCCAGAAGAATTGCACTCATTGTATAGCATTTTAAGTGACACGAAGCAAACAACTGAGCAAGGCGCGGTGATAAAACTTCTCGACGAAGAGATTCGTCACCGCCTGTGA 3750 40.21 MGTKLVTICVKEENDDFPSVPPGFEALTSFAVQNMEDNFQRGSDNLISCMPSTSISETQSVHMDIKMDSTLDTKITRSLRPRSCINYGQYDSYCDGVFDSERVEQNFSLKPPLPKGVIRGCAEYPKFIYPYVSSLFSCITVAKTAILYNYQQLITARWRPTESCRPDIEDAPIFYPTEEEFEDTLKYIASIRAKAEPYGICRIVPPSSWKPPCPLQELVKWTSSKFSTRVQRIDKLQNRDSLRKISRTQGQMKRKRRRNARMGVDCSTVDSLIGIKLKESHEPSVENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISGQAGSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEAAMKKHLPDLFEEQPDLLHKLLLKLFHQIHSCICNVKLEKRVNNFVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYCEQRRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSDNLRWKDVCGKDGVLAKSLKTRIERECIRRNTICSSSQAVKMESSFDATNEKECSLCLFDLHLSAVSCPCSPDKYACLNHAKDFCSCAQGARIFLFRYEINELSILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMHNSRLTKTSEGAELKDLALQQSSGGYLKDLEWRESFTEVPKTSSGITGDISSQHNSELAEDISMLKIKELVLKSNGLLKEIEKTNHDFQLRKEEHNGTVFNLTSASGQLSLKDIKHWANPVLKIGREDKVSVLKPKDVILLSDDEGDNEPKGSVLNKEKESSLARQLEDSDRLAGANTKASLCNHDKDTNLITPLTDAAVMNGKDVVYRPQKKLKTCSSPVVPVKNDDPQKNRSMSGNASPENAICNLDSPEELGINGQVLSTQICSSGKIDNEDKVCPSNFVGNERSIHGNLSCSKNSLNRYFRQKGPRIAKVVRRINCNVEPLEFGVVVSGKCWSNSLRIFPKGFKSRVRFISVLDPSNMAYYVSEILDVGVDRPPLFMVSLEQCPDEVFSHFSPARCWELVRERVNQEISKHHLLGRMDLPPLQPPKSLDGFEMFGFTSPAIVQFTIEAMDRNRVCTEYWDSRPYSRPQIQMIPPSQSITINRNPQRGSENRNIDGHFAGTDTILQGLFKKANPEELHSLYSILSDTKQTTEQGAVIKLLDEEIRHRL 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3891155 3903066 - BLOR02062 Blo10g00272 65468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 456 709 - -
Blo10g00272 1249 SUPERFAMILY Clavaminate synthase-like 335 551 - -
Blo10g00272 1249 SMART cupin_9 334 524 IPR003347 -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 456 709 - -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 280 439 - -
Blo10g00272 1249 MobiDBLite consensus disorder prediction 916 938 - -
Blo10g00272 1249 Pfam C5HC2 zinc finger 614 664 IPR004198 -
Blo10g00272 1249 Gene3D Cupin 156 508 - -
Blo10g00272 1249 SMART fyrc_3 1077 1172 IPR003889 GO:0005634
Blo10g00272 1249 MobiDBLite consensus disorder prediction 840 870 - -
Blo10g00272 1249 MobiDBLite consensus disorder prediction 840 865 - -
Blo10g00272 1249 Gene3D - 1019 1158 - -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 87 270 - -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 824 1247 - -
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 280 439 - -
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 87 270 - -
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 824 1247 - -
Blo10g00272 1249 SMART JmjN_1 170 211 IPR003349 -
Blo10g00272 1249 ProSiteProfiles FYR domain FYRN motif profile. 1012 1070 IPR003888 GO:0005634
Blo10g00272 1249 Pfam JmjC domain, hydroxylase 367 433 IPR003347 -
Blo10g00272 1249 Pfam JmjC domain, hydroxylase 453 507 IPR003347 -
Blo10g00272 1249 ProSiteProfiles FYR domain FYRC motif profile. 1073 1164 IPR003889 GO:0005634
Blo10g00272 1249 ProSiteProfiles JmjC domain profile. 334 524 IPR003347 -
Blo10g00272 1249 ProSiteProfiles JmjN domain profile. 171 212 IPR003349 -
Blo10g00272 1249 Pfam F/Y-rich N-terminus 1024 1067 IPR003888 GO:0005634
Blo10g00272 1249 SMART fyrn_3 1026 1070 IPR003888 GO:0005634
Blo10g00272 1249 Pfam jmjN domain 172 205 IPR003349 -
Blo10g00272 1249 MobiDBLite consensus disorder prediction 921 938 - -
Blo10g00272 1249 Pfam F/Y rich C-terminus 1076 1160 IPR003889 GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo05g00409 Blo10g00272 CCT
Blo10g00272 Blo11g00440 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00409 Blo-Chr5:5164814 Blo10g00272 Blo-Chr10:3891155 2.90E-140 dispersed
Blo10g00272 Blo-Chr10:3891155 Blo19g00246 Blo-Chr19:13243760 1.67E-59 dispersed
Blo11g00181 Blo-Chr11:1419284 Blo10g00272 Blo-Chr10:3891155 1.16E-25 transposed
Blo10g00272 Blo-Chr10:3891155 Blo11g00440 Blo-Chr11:3878954 5.94E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12814 PF05965 FYRC 9.30E-19 No_clan Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00272 - - mcha:111018179 1399.8