Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00272 ATGGGGACAAAACTTGTGACAATTTGTGTCAAAGAAGAGAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGGCATTGACATCTTTTGCTGTCCAGAATATGGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCATGCCTTCCACTAGTATTTCGGAAACACAATCCGTTCATATGGATATTAAAATGGACAGCACTCTTGATACTAAGATAACAAGGTCCCTACGGCCAAGATCATGTATTAACTATGGTCAATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGAGGGTTGAACAAAATTTCTCTTTGAAGCCTCCTCTTCCCAAGGGGGTAATTCGGGGCTGTGCAGAGTATCCTAAGTTCATCTATCCATATGTTTCTTCATTGTTTTCTTGTATTACTGTTGCTAAAACTGCTATTTTATACAACTATCAACAACTGATTACTGCAAGATGGCGTCCCACAGAGTCTTGCAGACCCGATATTGAGGATGCTCCCATTTTTTATCCGACTGAAGAGGAGTTTGAAGATACCTTGAAATATATAGCTAGTATACGTGCAAAAGCGGAACCTTATGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTGTCCTCTACAGGAACTAGTGAAATGGACAAGTTCCAAATTTTCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCCTTGAGAAAGATATCAAGGACTCAGGGCCAAATGAAGAGAAAAAGAAGAAGAAATGCACGCATGGGGGTAGATTGTTCTACGGTTGATTCTTTAATTGGAATTAAATTGAAAGAGAGTCACGAGCCATCTGTGGAAAATATTGAGGGGGAATATTGGCGAATGGTAGAGAAACCTACTGAGGAAATTGAGGTGTTATATGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTGGCCAAGCTGGTTCAACTTCAGATGAAAAATATGTAACATCGGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTACGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCGTGGCTGTATGTTGGGATGTGCTTTTCCTCCTTTTGCTGGCATGTCGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGAGTCCCAGGAAAGGATGCCTGCAAATTAGAAGCTGCAATGAAAAAGCATTTGCCTGATCTTTTTGAGGAACAACCTGATTTGCTTCATAAGCTGCTACTAAAACTATTTCATCAAATTCATTCATGTATATGCAATGTCAAATTGGAGAAACGAGTGAATAATTTCGTCACACAACTTTCCCCTTCTATATTAAAGTCTGAGGGAGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATTGCCATAGAATTATACTGTGAGCAGAGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACGTCAGATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCGAAATCACTCAAGACACGGATTGAAAGGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAGCAGCTTTGATGCCACTAACGAGAAGGAATGCAGTTTATGCCTTTTTGACTTGCACCTCTCTGCTGTTAGTTGTCCTTGTTCCCCAGATAAATACGCTTGCTTGAATCACGCGAAGGATTTCTGCTCCTGTGCTCAGGGTGCTAGAATTTTCCTCTTCCGATATGAGATTAATGAATTGAGTATCCTTGTTGAGGCTTTGGAAGGGAAACTAAGTGCAATTTATAGATGGGCTAAACTGGACCTTGGATTGGCTCTAAGTTCTCACATCTCTAAAGACAAGATGCATAATAGTAGATTAACCAAAACATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCGAGTGGTGGTTATCTTAAAGATTTAGAGTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCAAGTGGAATCACTGGTGACATCTCTTCTCAACACAACAGTGAATTAGCAGAAGATATATCAATGTTGAAGATCAAAGAATTAGTGTTGAAATCTAATGGTTTGTTAAAGGAAATTGAAAAGACGAATCATGACTTTCAGTTGAGGAAAGAAGAACACAATGGTACTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCTAAAAGACATAAAGCATTGGGCAAATCCTGTTTTGAAAATAGGAAGAGAGGATAAGGTTTCAGTTTTGAAACCCAAGGATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGAATAAAGAAAAAGAAAGTTCTTTAGCGAGACAATTAGAAGACTCTGACAGGTTGGCTGGAGCCAATACGAAGGCAAGCCTTTGCAACCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTTATGAATGGGAAGGATGTCGTTTATCGGCCTCAGAAGAAACTGAAAACTTGCTCATCTCCTGTTGTGCCAGTTAAAAATGACGACCCTCAAAAAAATAGGTCAATGTCAGGAAATGCTAGTCCAGAGAATGCCATTTGTAACCTAGATTCTCCGGAGGAATTAGGTATAAATGGTCAAGTTCTTTCAACTCAAATATGTAGTTCTGGAAAGATCGATAACGAGGATAAGGTTTGTCCTTCAAATTTTGTGGGCAATGAAAGAAGTATCCATGGAAATCTTTCTTGTTCCAAAAATAGTTTAAACAGGTACTTCAGGCAAAAGGGTCCTCGAATAGCAAAGGTAGTAAGGAGGATCAACTGTAACGTGGAGCCTTTAGAATTTGGAGTAGTGGTTTCTGGAAAGTGTTGGTCTAACAGTCTGAGAATTTTTCCTAAAGGATTTAAGAGCCGAGTCAGGTTCATAAGCGTCTTGGATCCATCGAACATGGCCTACTATGTTTCAGAGATTCTTGATGTTGGAGTAGATAGACCTCCTCTGTTCATGGTTTCGCTGGAGCAATGCCCAGATGAGGTGTTTAGTCATTTTTCACCAGCCCGTTGCTGGGAATTAGTGAGAGAGAGAGTGAATCAAGAAATCTCTAAGCATCATTTGTTAGGAAGAATGGATCTTCCTCCATTGCAGCCTCCTAAGAGTTTAGATGGTTTTGAAATGTTTGGATTCACTTCACCAGCTATTGTGCAGTTTACCATCGAAGCAATGGATCGAAATCGAGTCTGCACCGAGTATTGGGACTCACGACCTTATTCTCGGCCTCAAATACAAATGATACCTCCTTCGCAATCAATAACCATCAATAGAAATCCACAAAGAGGGTCAGAAAATAGAAACATTGACGGGCATTTTGCCGGAACTGATACAATACTCCAGGGGTTATTCAAGAAGGCAAATCCAGAAGAATTGCACTCATTGTATAGCATTTTAAGTGACACGAAGCAAACAACTGAGCAAGGCGCGGTGATAAAACTTCTCGACGAAGAGATTCGTCACCGCCTGTGA 3750 40.21 MGTKLVTICVKEENDDFPSVPPGFEALTSFAVQNMEDNFQRGSDNLISCMPSTSISETQSVHMDIKMDSTLDTKITRSLRPRSCINYGQYDSYCDGVFDSERVEQNFSLKPPLPKGVIRGCAEYPKFIYPYVSSLFSCITVAKTAILYNYQQLITARWRPTESCRPDIEDAPIFYPTEEEFEDTLKYIASIRAKAEPYGICRIVPPSSWKPPCPLQELVKWTSSKFSTRVQRIDKLQNRDSLRKISRTQGQMKRKRRRNARMGVDCSTVDSLIGIKLKESHEPSVENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISGQAGSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEAAMKKHLPDLFEEQPDLLHKLLLKLFHQIHSCICNVKLEKRVNNFVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYCEQRRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSDNLRWKDVCGKDGVLAKSLKTRIERECIRRNTICSSSQAVKMESSFDATNEKECSLCLFDLHLSAVSCPCSPDKYACLNHAKDFCSCAQGARIFLFRYEINELSILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMHNSRLTKTSEGAELKDLALQQSSGGYLKDLEWRESFTEVPKTSSGITGDISSQHNSELAEDISMLKIKELVLKSNGLLKEIEKTNHDFQLRKEEHNGTVFNLTSASGQLSLKDIKHWANPVLKIGREDKVSVLKPKDVILLSDDEGDNEPKGSVLNKEKESSLARQLEDSDRLAGANTKASLCNHDKDTNLITPLTDAAVMNGKDVVYRPQKKLKTCSSPVVPVKNDDPQKNRSMSGNASPENAICNLDSPEELGINGQVLSTQICSSGKIDNEDKVCPSNFVGNERSIHGNLSCSKNSLNRYFRQKGPRIAKVVRRINCNVEPLEFGVVVSGKCWSNSLRIFPKGFKSRVRFISVLDPSNMAYYVSEILDVGVDRPPLFMVSLEQCPDEVFSHFSPARCWELVRERVNQEISKHHLLGRMDLPPLQPPKSLDGFEMFGFTSPAIVQFTIEAMDRNRVCTEYWDSRPYSRPQIQMIPPSQSITINRNPQRGSENRNIDGHFAGTDTILQGLFKKANPEELHSLYSILSDTKQTTEQGAVIKLLDEEIRHRL 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3891155 3903066 - BLOR02062 Blo10g00272 65468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 456 709 - -
Blo10g00272 1249 SUPERFAMILY Clavaminate synthase-like 335 551 - -
Blo10g00272 1249 SMART cupin_9 334 524 IPR003347 -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 456 709 - -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 280 439 - -
Blo10g00272 1249 MobiDBLite consensus disorder prediction 916 938 - -
Blo10g00272 1249 Pfam C5HC2 zinc finger 614 664 IPR004198 -
Blo10g00272 1249 Gene3D Cupin 156 508 - -
Blo10g00272 1249 SMART fyrc_3 1077 1172 IPR003889 GO:0005634
Blo10g00272 1249 MobiDBLite consensus disorder prediction 840 870 - -
Blo10g00272 1249 MobiDBLite consensus disorder prediction 840 865 - -
Blo10g00272 1249 Gene3D - 1019 1158 - -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 87 270 - -
Blo10g00272 1249 PANTHER LYSINE-SPECIFIC DEMETHYLASE 824 1247 - -
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 280 439 - -
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 87 270 - -
Blo10g00272 1249 PANTHER JUMONJI 14-RELATED 824 1247 - -
Blo10g00272 1249 SMART JmjN_1 170 211 IPR003349 -
Blo10g00272 1249 ProSiteProfiles FYR domain FYRN motif profile. 1012 1070 IPR003888 GO:0005634
Blo10g00272 1249 Pfam JmjC domain, hydroxylase 367 433 IPR003347 -
Blo10g00272 1249 Pfam JmjC domain, hydroxylase 453 507 IPR003347 -
Blo10g00272 1249 ProSiteProfiles FYR domain FYRC motif profile. 1073 1164 IPR003889 GO:0005634
Blo10g00272 1249 ProSiteProfiles JmjC domain profile. 334 524 IPR003347 -
Blo10g00272 1249 ProSiteProfiles JmjN domain profile. 171 212 IPR003349 -
Blo10g00272 1249 Pfam F/Y-rich N-terminus 1024 1067 IPR003888 GO:0005634
Blo10g00272 1249 SMART fyrn_3 1026 1070 IPR003888 GO:0005634
Blo10g00272 1249 Pfam jmjN domain 172 205 IPR003349 -
Blo10g00272 1249 MobiDBLite consensus disorder prediction 921 938 - -
Blo10g00272 1249 Pfam F/Y rich C-terminus 1076 1160 IPR003889 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00272 - - - mcha:111018179 1399.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo05g00409 Blo10g00272 CCT
Blo10g00272 Blo11g00440 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00409 Blo-Chr5:5164814 Blo10g00272 Blo-Chr10:3891155 2.90E-140 dispersed
Blo10g00272 Blo-Chr10:3891155 Blo19g00246 Blo-Chr19:13243760 1.67E-59 dispersed
Blo11g00181 Blo-Chr11:1419284 Blo10g00272 Blo-Chr10:3891155 1.16E-25 transposed
Blo10g00272 Blo-Chr10:3891155 Blo11g00440 Blo-Chr11:3878954 5.94E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g573 Blo05g00409 . Bda04g00506 . . Bpe06g00417 . . Cmo08g00271 . . . . . . Cpe17g00909 . Bhi09g01230 . . . . . . Cla09g00747 Cam09g0784 Cec09g0780 Cco09g0778 Clacu09g0795 . Cre09g0761 Cone17ag0685 . . . Lsi02g02177 Csa07g01613 . . . Blo10g00272 . . . . Bma09g00587 . . . . Cma08g00273 . Car08g00251 . . . . . . . . . . . . . . . . . . . Chy01g01475 .
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00181 . 202 1022 JUMONJI Transcription Factor Family AT1G30810 52.6 9.1e-237 817.0
Blo10g00272 BCT,CCT 154 687 JUMONJI Transcription Factor Family AT1G30810 53.7 5.6e-170 595.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12814 PF05965 FYRC 9.30E-19 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00272 Blo_Chr10 FPKM 0.880893 0.0 2.021753 1.492685 5.359317 5.423287 6.261474 0.914803 1.380295 0.894075