Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00280 ATGAATCCCATATCTAAACAGGCTCCTCCATTAGTTGCCGGCACTAGGACTGTCGGCCATTTGTTCTCATCATCCTCAGCTTTTCACAGCAGTGTTCATTTTTCTTCCATTTCATCGCAACCTCAACCGTCGCCCTTCATTTCTCAGTCAGCGAGAGATGAAGCATTGTTGCCACCTACTCATTCATCTCATACAGAGTTACAGTCTACGACATTGACTATTAATACTGAAGAAAGTAGTATATCTTGGTCTTCCGAGCAACTTCATGGTCTTCTTGATTTTTCAGACAATGTTTTGGTTCAGAATGGCCAGGTTGAAAACACGAATGACGTCATAACAACAGATGACCATTCGAAAAGAACTGATTGGCCAACTTGGGCAGATCAGTTTATTTCTGTTGATGACGGCATTGAGCCAAATTGGAGTGACCTTTTTTCAGATGGTGATGGGCCAGCTCCCGAAGCGGTAAATTCGTCTTCTGAAACTCTTGGTCCACGGCCCCAGACCAGTAATGTAGATCATTTGCCACCTTCTTCTAACTCATTATCTTCTGCACCACCAACTAGACCAAGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTGGAGGCAGTCGATCATCTTGGTGGCAGTGAAAAGGCCACTCCAAAGGGTGTCTTGAGGCTGATGAACGTTGAAGGGTTGACAATATATCATGTGAAAAGCCACCTGCAGAAATATCGAACTGCCAGATTTAAACCTGAGCCATCCAGTGGATCGTCAGAGAAAAAAATTGCCTCTGGTGAAGAAATGAAAAATCTAGACTTGAAGACGAGTTTGGGAATAACTGAAGCATTGCGAATGCAAATGGAAGTTCAGAAGCAGCTTCATGAACATCTGGAGATTCAAAGACATTTGCAGTTACGAATCGAAGAACAAGGAAGACGACTTCAGGAGATGTTTGAGAAACAAAGGAACATGGATGACACCAAGTTGAAGGCTTCTTCATCCACCTTAGACATACCCTCTTCTCCACAGCCAAATGCAGCGGAAATCGCCACTCCAACCAAAGAGAATTCTGGGCCTGTAAATGGCAAGAAGAATGGACGGGAAGCTGAAACAACCAAGAATGCCGAGCAACGTGAAGACAAACCTCAAAAACGAGCAAGAACAGAAGATGAGGAGGCATAA 1173 44.33 MNPISKQAPPLVAGTRTVGHLFSSSSAFHSSVHFSSISSQPQPSPFISQSARDEALLPPTHSSHTELQSTTLTINTEESSISWSSEQLHGLLDFSDNVLVQNGQVENTNDVITTDDHSKRTDWPTWADQFISVDDGIEPNWSDLFSDGDGPAPEAVNSSSETLGPRPQTSNVDHLPPSSNSLSSAPPTRPRMRWTPELHEAFVEAVDHLGGSEKATPKGVLRLMNVEGLTIYHVKSHLQKYRTARFKPEPSSGSSEKKIASGEEMKNLDLKTSLGITEALRMQMEVQKQLHEHLEIQRHLQLRIEEQGRRLQEMFEKQRNMDDTKLKASSSTLDIPSSPQPNAAEIATPTKENSGPVNGKKNGREAETTKNAEQREDKPQKRARTEDEEA 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4032598 4035628 - BLOR02070 Blo10g00280 65476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00280 390 MobiDBLite consensus disorder prediction 141 192 - -
Blo10g00280 390 MobiDBLite consensus disorder prediction 363 390 - -
Blo10g00280 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 246 IPR017930 -
Blo10g00280 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 378 IPR044848 GO:0003700
Blo10g00280 390 Gene3D - 188 247 - -
Blo10g00280 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 190 243 IPR006447 GO:0003677
Blo10g00280 390 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 2 378 - -
Blo10g00280 390 Pfam MYB-CC type transfactor, LHEQLE motif 276 320 IPR025756 -
Blo10g00280 390 MobiDBLite consensus disorder prediction 153 188 - -
Blo10g00280 390 Pfam Myb-like DNA-binding domain 191 242 IPR001005 -
Blo10g00280 390 MobiDBLite consensus disorder prediction 325 357 - -
Blo10g00280 390 MobiDBLite consensus disorder prediction 318 390 - -
Blo10g00280 390 SUPERFAMILY Homeodomain-like 187 243 IPR009057 -
Blo10g00280 390 MobiDBLite consensus disorder prediction 245 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00280 - - - csv:101216567 390.963
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo05g00493 Blo10g00280 CCT
Blo10g00280 Blo11g00435 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00280 Blo-Chr10:4032598 Blo05g00493 Blo-Chr5:8182909 7.40E-59 dispersed
Blo11g00313 Blo-Chr11:2533079 Blo10g00280 Blo-Chr10:4032598 1.36E-17 dispersed
Blo18g00480 Blo-Chr18:5818249 Blo10g00280 Blo-Chr10:4032598 1.77E-18 dispersed
Blo05g00238 Blo-Chr5:2618718 Blo10g00280 Blo-Chr10:4032598 1.88E-17 transposed
Blo09g00429 Blo-Chr9:15261328 Blo10g00280 Blo-Chr10:4032598 1.96E-50 transposed
Blo10g00280 Blo-Chr10:4032598 Blo11g00435 Blo-Chr11:3810071 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g615 Blo05g00493 . . Bda10g00450 . Bpe06g00341 . . . . Cma02g01726 Cma19g00111 Car02g01478 . . . . . . . . . . . . . . . . . . Cone17ag0682 . . . . . Chy04g01110 . . Blo10g00280 . . . . Bma09g00485 Bma15g00732 . Cmo02g01770 Cmo19g00123 . . . . Cpe05g00081 . . . . . . . . Cla07g00121 Cam07g0128 Cec07g0164 Cco07g0129 Clacu07g0122 Cmu07g0186 Cre07g0492 . Csa03g02617 . Cme04g00960
Vvi14g670 Blo10g00280 Blo11g00435 Bda07g01170 . Bpe11g01303 Bpe09g00654 Bma13g00423 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005858 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 1 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12815 PF00249 Myb_DNA-binding 3.60E-08 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00280 Blo_Chr10 FPKM 30.4655 29.67457 17.177444 16.807411 11.087588 12.338078 10.553399 13.999666 15.510839 13.57668