Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00348 ATGAATTTCACGATCGAGCAACGAGATATCTTTCCTACGAGAAGGTCTTCTTCAAACTTTACCTCCACTTCCCGCCATGGAAGCGGTACTTTCCTCATTTTTCTCCTTCTCCTAGTTTTTGCTTCGTCGGCCATCGCGCAGGATGATCCGAATTCGATGAATGATCCGTATCAGAAATTCAGCCCGTCTATGGCGGTGATAGTCGTGGTACTCGTTGCCGCGCTTTTTTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCGATCCGCAATCCACTGGTGGAAGCATCAGAAACCTCGCGGGAGCAGTCACCGGGAGATCGAGACGGGCCGCACGGGGCCTTGATGCGAGCGTGATCGGCACTTTTCCTACATTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAAAGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTTGAAGAGGAGGAAACGCTGCGTTTGATCCCCAAGTGTGACCACGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTGGTCCCTCAACCCGACGACCCGGCAGGTCAACCCACTGAGTCCACCACCGAGTTAGATATTGAGTCCCAAACCCACACCGTCGAGGAACAACAGCTAGCATCGTCTCCTCGAGCGATTGCGCCTGAAGCTCCGGCGACGAAAGTTTTGAATAGAAACAGGACACGTGGCTCCAGATCGAGCGGATTACGATGGTTGCATTCTCGTTCTCATTCGACGGGCCATTCTCTAGTCCAACCAGGCGAAAATACGGAGAGGTACACACTGAGATTGCCGGTGGAGGTAAGAAAGCAAATAATGAACCGGGAATTGAACCGGGCATCAAGCCTGGTGTTGTTGCCGAGTGAAATGAGTTCAAGGCGAGGGTACAGAATGAGTGGCGGTGAAGGAAGCGGTCGAGGGAAGTCCTCCCGTCGGCTCGATCGGACGGCAACAGCGAAGTCCGACAGGTGGGTGTTTTCGATGACTCCGCCATTTTTTACGAGAATGGGATCGATGAAAACGGCGAAGGTGGTGACCGCCGATGGCGAGGGGACGTCGACGCCAGAATCAAAACTCGGAGTGTAG 1131 54.02 MNFTIEQRDIFPTRRSSSNFTSTSRHGSGTFLIFLLLLVFASSAIAQDDPNSMNDPYQKFSPSMAVIVVVLVAALFFMAFFSVYIRQCSDPQSTGGSIRNLAGAVTGRSRRAARGLDASVIGTFPTFAYSEVKELKKGKGALECAVCLNEFEEEETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDPAGQPTESTTELDIESQTHTVEEQQLASSPRAIAPEAPATKVLNRNRTRGSRSSGLRWLHSRSHSTGHSLVQPGENTERYTLRLPVEVRKQIMNRELNRASSLVLLPSEMSSRRGYRMSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFFTRMGSMKTAKVVTADGEGTSTPESKLGV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5310702 5311832 + BLOR02138 Blo10g00348 65544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00348 376 SUPERFAMILY RING/U-box 121 194 - -
Blo10g00348 376 CDD RING-H2_EL5_like 143 186 - -
Blo10g00348 376 MobiDBLite consensus disorder prediction 193 268 - -
Blo10g00348 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 191 IPR013083 -
Blo10g00348 376 PANTHER RING FINGER DOMAIN-CONTAINING 31 306 - -
Blo10g00348 376 SMART ring_2 144 185 IPR001841 -
Blo10g00348 376 MobiDBLite consensus disorder prediction 239 268 - -
Blo10g00348 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 31 306 - -
Blo10g00348 376 MobiDBLite consensus disorder prediction 308 334 - -
Blo10g00348 376 Pfam Ring finger domain 143 186 IPR001841 -
Blo10g00348 376 MobiDBLite consensus disorder prediction 197 222 - -
Blo10g00348 376 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00348 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - zju:107411967 344.739
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00348 Blo-Chr10:5310702 Blo19g00194 Blo-Chr19:8758782 4.51E-28 dispersed
Blo04g00042 Blo-Chr4:405254 Blo10g00348 Blo-Chr10:5310702 3.95E-16 transposed
Blo11g00017 Blo-Chr11:192426 Blo10g00348 Blo-Chr10:5310702 3.96E-20 transposed
Blo17g00109 Blo-Chr17:1003174 Blo10g00348 Blo-Chr10:5310702 4.40E-63 transposed
Blo01g00093 Blo-Chr1:1326539 Blo10g00348 Blo-Chr10:5310702 1.05E-24 transposed
Blo10g00348 Blo-Chr10:5310702 Blo11g00488 Blo-Chr11:4502163 1.79E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00348 . 32 350 Rapid Response to Elicitors AT3G05200 50.8 8.2e-74 274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007000 1 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00348 Blo_Chr10 FPKM 80.337837 83.1399 107.650375 109.383865 79.057007 93.899086 58.455238 285.501984 300.182861 277.781616