Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00348 ATGAATTTCACGATCGAGCAACGAGATATCTTTCCTACGAGAAGGTCTTCTTCAAACTTTACCTCCACTTCCCGCCATGGAAGCGGTACTTTCCTCATTTTTCTCCTTCTCCTAGTTTTTGCTTCGTCGGCCATCGCGCAGGATGATCCGAATTCGATGAATGATCCGTATCAGAAATTCAGCCCGTCTATGGCGGTGATAGTCGTGGTACTCGTTGCCGCGCTTTTTTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCGATCCGCAATCCACTGGTGGAAGCATCAGAAACCTCGCGGGAGCAGTCACCGGGAGATCGAGACGGGCCGCACGGGGCCTTGATGCGAGCGTGATCGGCACTTTTCCTACATTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAAAGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTTGAAGAGGAGGAAACGCTGCGTTTGATCCCCAAGTGTGACCACGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTGGTCCCTCAACCCGACGACCCGGCAGGTCAACCCACTGAGTCCACCACCGAGTTAGATATTGAGTCCCAAACCCACACCGTCGAGGAACAACAGCTAGCATCGTCTCCTCGAGCGATTGCGCCTGAAGCTCCGGCGACGAAAGTTTTGAATAGAAACAGGACACGTGGCTCCAGATCGAGCGGATTACGATGGTTGCATTCTCGTTCTCATTCGACGGGCCATTCTCTAGTCCAACCAGGCGAAAATACGGAGAGGTACACACTGAGATTGCCGGTGGAGGTAAGAAAGCAAATAATGAACCGGGAATTGAACCGGGCATCAAGCCTGGTGTTGTTGCCGAGTGAAATGAGTTCAAGGCGAGGGTACAGAATGAGTGGCGGTGAAGGAAGCGGTCGAGGGAAGTCCTCCCGTCGGCTCGATCGGACGGCAACAGCGAAGTCCGACAGGTGGGTGTTTTCGATGACTCCGCCATTTTTTACGAGAATGGGATCGATGAAAACGGCGAAGGTGGTGACCGCCGATGGCGAGGGGACGTCGACGCCAGAATCAAAACTCGGAGTGTAG 1131 54.02 MNFTIEQRDIFPTRRSSSNFTSTSRHGSGTFLIFLLLLVFASSAIAQDDPNSMNDPYQKFSPSMAVIVVVLVAALFFMAFFSVYIRQCSDPQSTGGSIRNLAGAVTGRSRRAARGLDASVIGTFPTFAYSEVKELKKGKGALECAVCLNEFEEEETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDPAGQPTESTTELDIESQTHTVEEQQLASSPRAIAPEAPATKVLNRNRTRGSRSSGLRWLHSRSHSTGHSLVQPGENTERYTLRLPVEVRKQIMNRELNRASSLVLLPSEMSSRRGYRMSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFFTRMGSMKTAKVVTADGEGTSTPESKLGV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5310702 5311832 + BLOR02138 Blo10g00348 65544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00348 376 SUPERFAMILY RING/U-box 121 194 - -
Blo10g00348 376 CDD RING-H2_EL5_like 143 186 - -
Blo10g00348 376 MobiDBLite consensus disorder prediction 193 268 - -
Blo10g00348 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 191 IPR013083 -
Blo10g00348 376 PANTHER RING FINGER DOMAIN-CONTAINING 31 306 - -
Blo10g00348 376 SMART ring_2 144 185 IPR001841 -
Blo10g00348 376 MobiDBLite consensus disorder prediction 239 268 - -
Blo10g00348 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 31 306 - -
Blo10g00348 376 MobiDBLite consensus disorder prediction 308 334 - -
Blo10g00348 376 Pfam Ring finger domain 143 186 IPR001841 -
Blo10g00348 376 MobiDBLite consensus disorder prediction 197 222 - -
Blo10g00348 376 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00348 Blo-Chr10:5310702 Blo19g00194 Blo-Chr19:8758782 4.51E-28 dispersed
Blo04g00042 Blo-Chr4:405254 Blo10g00348 Blo-Chr10:5310702 3.95E-16 transposed
Blo11g00017 Blo-Chr11:192426 Blo10g00348 Blo-Chr10:5310702 3.96E-20 transposed
Blo17g00109 Blo-Chr17:1003174 Blo10g00348 Blo-Chr10:5310702 4.40E-63 transposed
Blo01g00093 Blo-Chr1:1326539 Blo10g00348 Blo-Chr10:5310702 1.05E-24 transposed
Blo10g00348 Blo-Chr10:5310702 Blo11g00488 Blo-Chr11:4502163 1.79E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00348 K10664 - zju:107411967 344.739