Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00390 ATGAGGAAGCGTCAAGTTGTTCTTAGGAGAGAAGAAGCTTCTAGAAGCTCAACAACATCATCTTTCACAGTTAGAAATGTCAGATATGGAGAGTGCCAGAAAAACCATGCTGCCGGAGTCGGGGGATTTGCTGTCGATGGGTGCCGGGAATTCATGGCGAGCGGAGGCGAAGAGTCGAGTGGTGCACTCACTTGTGCTGCCTGTGGTTGCCACAGGAATTTCCATAGAAGGGAAGTTGAGACTGAGATAGTTTGCGATTGTTCTTCACCTTCCTCTAATGGGTCATAG 288 48.61 MRKRQVVLRREEASRSSTTSSFTVRNVRYGECQKNHAAGVGGFAVDGCREFMASGGEESSGALTCAACGCHRNFHRREVETEIVCDCSSPSSNGS 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6597974 6598261 - BLOR02180 Blo10g00390 65586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00390 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Blo10g00390 95 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 79 IPR006456 -
Blo10g00390 95 MobiDBLite consensus disorder prediction 1 20 - -
Blo10g00390 95 Pfam ZF-HD protein dimerisation region 26 79 IPR006456 -
Blo10g00390 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 93 - -
Blo10g00390 95 PANTHER MINI ZINC FINGER PROTEIN 6 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00390 - - - pop:7482471 159.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00390 Blo-Chr10:6597974 Blo15g00309 Blo-Chr15:3512138 7.31E-32 dispersed
Blo10g00390 Blo-Chr10:6597974 Blo16g00046 Blo-Chr16:1874806 1.47E-21 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00390 . 1 95 Zinc finger-homeobox gene family AT3G28917 78.0 3.5e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12824 PF04770 ZF-HD_dimer 9.00E-29 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00390 Blo_Chr10 FPKM 3.236145 3.914201 6.183725 5.516985 5.51516 4.72128 4.731456 1.887746 2.766819 2.306774