Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00401 ATGGATCCCAAAGGCTCAAAGCAGCCGCAGGAAGTGATTCCCAATTTTTTGCAACCTCGCCCCCAATCTCAGCTAGAATCAGATATGGGTGAAAATAAGTCTTCCGAAATTAAGGATTTTCAGATTATAGTATCAGATAAAGAAGAGGGGAAGAAGCAATTAGCTCCAAAAAGAAGCTCAAATAAAGATAGGCACACCAAGGTAGATGGTCGAGGTAGAAGGATAAGGATGCCGGCTCTGTGCGCAGCGAGAATTTTCCAATTGACAAGAGAATTAGGGCATAAATCAGATGGGGAAACCATCCAATGGCTTTTGCAACAGGCGGAGCCGTCGATAATTGCGGCTACGGGAACCGGAACTATAGCAGCTTCTGCTTTAGCGGCGGCCGGAGTATCTGTTTCTCAGCAAGGGACCTCTTTATCAACTGGATTGCACCAAAAGATCGAAGATGATTTTGGAGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTGGGTGGCAATTTGGGGAGACCACCACCCCATGTGGCTTCAGGGATATGGCCTCCTGTCAGTGGCTTTGGGTTTCAGTCATCGTCTTCACCGACAACAAATATGACACCCGAGAGTGCAAATTACCTCCAGAAGATCGGCTTCCCCGGATTTGACTTGCCAGTCGGGAATATCAGTCCGATGAGTTTCACCTCGATTCTGAGCAGCAATAGCCAGCAGCTGCCAGAGCTGGGGCTAGGGTTGTCGCCGGAAGGCCACATCGGAGTTTTGAACCCACAGGCTTTCACTCAGATTTATCAGCAGATGCGGCAGGCTAGAGTTCATCCGCAACATCACCATGCTTCTCCTAAGGATGACTCTCAAGAATTAAAGTCTGAATCTGGTTTGCCCCTCTCCTTCAATTCATACAATTCCTTAGCAGGTGCTATCTTATCCAACCAGGCAGCTTGGTTTGAGCCTTACTCTTGTTTTTTCGTCCAAAGTGGTAAAATCATATTAGTTGAAGTTAAGGATTATACTTGTCCTCAAGTATATCACATTTCAGTGGTGAAGTTAAAAGACTTTAGGACTGTCTTTGCTTTACGCCGTAGCTTTAGAGCCTGTATTGGAGTATCTCGAGCGGATAGACCATTGTTGGACTCTGCTCTTCCTTTCAGTAGCCATGTCTCTTAA 1161 46.6 MDPKGSKQPQEVIPNFLQPRPQSQLESDMGENKSSEIKDFQIIVSDKEEGKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIAASALAAAGVSVSQQGTSLSTGLHQKIEDDFGGSGSRTSWAMVGGNLGRPPPHVASGIWPPVSGFGFQSSSSPTTNMTPESANYLQKIGFPGFDLPVGNISPMSFTSILSSNSQQLPELGLGLSPEGHIGVLNPQAFTQIYQQMRQARVHPQHHHASPKDDSQELKSESGLPLSFNSYNSLAGAILSNQAAWFEPYSCFFVQSGKIILVEVKDYTCPQVYHISVVKLKDFRTVFALRRSFRACIGVSRADRPLLDSALPFSSHVS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6870883 6872373 - BLOR02191 Blo10g00401 65597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00401 386 MobiDBLite consensus disorder prediction 31 71 - -
Blo10g00401 386 MobiDBLite consensus disorder prediction 11 30 - -
Blo10g00401 386 Pfam TCP family transcription factor 60 146 IPR017887 -
Blo10g00401 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 280 IPR005333 GO:0003700
Blo10g00401 386 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 31 280 - -
Blo10g00401 386 MobiDBLite consensus disorder prediction 269 289 - -
Blo10g00401 386 MobiDBLite consensus disorder prediction 1 71 - -
Blo10g00401 386 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00401 - - - jre:108987051 399.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00401 Blo-Chr10:6870883 Blo15g00307 Blo-Chr15:3443093 6.45E-39 dispersed
Blo17g00570 Blo-Chr17:10478760 Blo10g00401 Blo-Chr10:6870883 2.21E-112 transposed
Blo10g00401 Blo-Chr10:6870883 Blo11g00611 Blo-Chr11:6109106 3.36E-158 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00426 . 35 259 TCP Transcription Factor Family AT5G23280 51.7 2.3e-50 196.1
Blo04g00768 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 81.7 5.6e-40 162.5
Blo10g00401 . 1 284 TCP Transcription Factor Family AT3G27010 53.0 5.0e-66 248.4
Blo11g00611 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 3.8e-58 222.2
Blo17g00570 . 1 272 TCP Transcription Factor Family AT3G27010 50.2 1.1e-57 220.7
Blo04g00426 . 8 259 TCP Transcription Factor Family AT5G08330 51.8 4.9e-58 221.5
Blo06g01211 . 26 126 TCP Transcription Factor Family AT5G60970 76.5 1.3e-38 157.5
Blo13g00343 . 8 191 TCP Transcription Factor Family AT2G31070 53.8 8.3e-41 164.9
Blo13g00346 . 8 191 TCP Transcription Factor Family AT2G31070 53.3 1.1e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12825 PF03634 TCP 9.10E-31 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00401 Blo_Chr10 FPKM 0.885253 1.05671 1.403626 1.46866 0.689059 0.603765 0.650343 3.12778 2.706218 2.506613