Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00404 ATGTGCTTAGTCTGGGTGGCCATGGTTGTGGCTCAGTTGCAGGGATTTCGAGGGTGTGTGGAGGAAGAAAGAGTGGGGTTGCTAGCTCTTTCTCCGATGAAAGGTGTAAACACGAGTAGTGACTGTTGCGCATGGGTGGGCGTCAATTGCAGTGCAACCAGTGGGCGTGTTGAGATCCTCTCTCTTTTTGAACTAAGAAACAATGGATCGCTTTTTAAACTGAGAAACTACAACAACAAACATTTAGGGTCACACAGAAATGATGAATCTTTAGGATCTTTCTTGAATATTTCTTTGTTTCTTCCCTTTCAAGAATTGCTGGTACTCGATTTATCCTTTTGCGACATTCGTGGTTTGCTACAGCAAGCAGATTTCTGCAAAATGAACAACATTATCAAATTGAATTTGGGACATAACAGCATAACAGATTTTGTGAACATGAGAAGCTTGAAATATTTGGATATCAGCCGCAATCGTTTGAATATCAATCTTCAAGATTTCTGCAAATTGAACAACATTATCAACTTGAATTTGGGATATAACAGTATAACAGGTCCTCTTCCTGATTGTGTTGGCAACATGACTAAGCTTCAACGTCTTGAAATCGACTACAACATGCTAAGTGGAAACATACCACCAACCATTGGGAACCTCTCTGATCTTGGCGTCTTATCATTAGAAGGCAATTACTTTGAAGGTTCATTCTCTCTCCGCTCTTTGGCCAATAATTCACAACTTTATTTTCTCAGCTTATCCGGACATGACAATAATCTTCAACTGGAAACTGAAATTCCAACGTGGTTTCCTTCTTTTCAACTGAAGGGTCTCCGGCTGAGAAATTTAACCCTAAACAGAATGTCTAATTCTGTTATTCCTAGTTTCTTGTTGCATCAATATGATTTAGGGTTCGTTGACCTTTCTCATAACCAGTTAGAAGGCAGCTTTCCATCTTGGCTGTTACAGAATAACTCAGATTTGGGAGATCTAAGGTTGAGCGGAAATTTCCTTATGGGAAATCTTATCCTTCCTGACTTCATCCATCTTTTGTCTGTTCTCGAAATTTCTAGCAATAAGATTGATGGTAAGCTTCCTGATGGGATAGGATTGTTGCTACCCAGACTCACAGTTTTTAATATATCGAGGAATAGATGTGAAGGTACCCTTCCCTCTTCATTGGGGACACTACAAGGACTTAGCACTGTGGACTTTTCCTTCAACAGTTTCAGCGGCGAACTTCAAGAAAATATGTTTGCCAGAAGCAGAGGAATGATGATGATAAACCTTTCAAACAACCTTTTTCATGGTAAGATGTCTTTGAACCTGACAAACCTCGCTTCCATGAGGATCCTACTTTTGAATAACAACAGATTCAGTGGAACTATTGAGGACTGGACGCTTGGAGTTGGAGCAGAGGCTATTTCACAACTATTAGTTTTGGACATTTCTAATAACATGATTTCAGGTCGACTCCCGAGTTGGATCACTCAGTCCATAAACCTTAAAGTTCTCAAAGTCTCCAACAATTATTTAGAAGGTGATATTCTAGTTGAGCTATGCAACATGGAGCTATTTTATTTAGATATCTCCCGCAATAAGTTCTCTGGTTCTGTACCTTCTTGTTTTAGTAATTCTTCATTGAAGGCATTGTCTCTGCGAGATAACAACTTATCAGGAGCAATACCCGAAGAATTTCTAAACAACTCCAACTTAATAGCCCTTGATCTCAGTTACAATAATTTTTCTAACCTCATTCTCCCCAATTGGATCTATTCTCTAAAAAACATACAGATACTTCTGATGGCAGGAATGCAATTAGAAGGAGAAATCTCAATGCAGCTTTGCAAACTAGAAAACATCAAGATCTTGGACCTTTCACATAACAATTTCAATGGTTCTATTCCGTCGTGTTTATTTGAAATGCCTTTTTGGGTTACAGACACTCAAGATCTTGGATTTGTTTCTATTATGGATACCGCAATTTTGTCCTCCAATAACTTCTTCATGCTTGCGTATCCTATATTTATCACCAACTTTCAAGCTATAGCAGGATATGAGGCCGAATTCACTACAAAAGGGGTATCACACAGTTACCAAAACAACCTCCTTAATTACATGACTGGACTAGATGTGTCGAACAATAAATTATCCGGCCAAATTCCAACTCAAATTGAATATTCACAAGCAATCCGCAGCCTAAACTTGTCGAATAATCAACTATGGGGTTCCATACCAAGCAGCATTTCGAAAATGCGATTAATTGAGAGTTTAGACCTTTCGTCCAATAATTTGAGCGGAGAAATCCCATATGAAATCGCCAACCTTAACTTTATAAGCATCTTCAATGTCTCGAACAATAACCTATCAGGTCCTACCCCCAACAGAGGCCAATTTGCCAACTTTGATGAAAGGAACTATGGAGGAAATGAGTATCTATGCGGACCACTTCTCCACAGGGATTGCACAAGCCCCGTGCCCTCTACACCATCTGATGAACAAGGTGAATACGAAACGGGCCTTGAAATGGCGTCGTTTTGGTGGACCTTTGTAGCTTCTTACATTTTTGTGGTTGTATTCTGGGCAATAGTTCTTGAGCCTGTAATGCGTAGAAGGAGAAAGAAGAAGAACGAGAAGATTAAGTTGGAAAAATCTATGGACTGGGACTGGAGAAAATTTTCTTGGGAGGAAACTGAAAATGTATTAACTGAAGAAACAATCAACGATACCCTTTTGGTTGGATCGGAGAAGAAAATCAAGAAAGTGGAAATTCAGGTGGGTAATGGCGGAAACAATTCAGAGGAGAAATTGAAGAAGAGGGTAAGTAGAACAAGGGTGGTTCCTTCGCCGAGATCGCCGAAAAGGGATAGCAATCTGACGTGCTTGGTCGATGGTTGCAAGGCCGACCTGAGCAATTGCAAGGACTATCATCGCCGGCATAGGGTCTGTGAGCGCCACTCCAAGATTCCGGTCGTGATCGTGAGGGGCGAAGAACAACGATTTTGCCAGCAGTGTAGCAGATTCCATTCTCTGGGAGAGTTTGATGAGGTGAAAAGAAGCTGCCGTAAACGCCTGGACGGGCACAATCGGCGCCGGAGAAAGCCTCAGCCGGAATCCATGTACTTGACTCCCAAGGACTTCCTGTCCAATTTCAAAGGTCCCAGAATCTTGCAATTCAGCAGTTCAAAGCTCAGTACGCCTGATTTGGATGCAAAGATTGCGTTGGCTCCTTATCTTTGGAAAACAGAAGCTGAAGCCATAGTCGATACTCGTCGAAAACGAATTCCAGCAATAGACCGGAAAACTCCTCCAAATCCCTCGGCTGCCCATATTAGCCATGTCGGAGATAAACAATTCTCATTGAAGCGGACAAACAATCAGAAAGATATCAACCAATCAACCCCTCAAATTTCTTCCTGCAACCCACTCCCCTTCACCATCGCCTCGCCGGAAAGTGAAAGAGGCATCCAAGGGATATCGCAGCCTGTTAACTCGGGTTGTGCTCTCTATCTTCTGTCATCGTCACCATCGCAAGCTTCAGGACTTGGTCTAAGCTGCTTCGATCTTCCGCAAGAATACTACGCCTACTCGAAGGAATCGACCGCCATTCTGCAAGATATGATGCTCCAAACGAGAGGCTCTGACGGCTCGTTCGAAGCTCAGCTGTCCCCGTGGTTCCTAACTTCTTGGGAGTAG 3690 42.06 MCLVWVAMVVAQLQGFRGCVEEERVGLLALSPMKGVNTSSDCCAWVGVNCSATSGRVEILSLFELRNNGSLFKLRNYNNKHLGSHRNDESLGSFLNISLFLPFQELLVLDLSFCDIRGLLQQADFCKMNNIIKLNLGHNSITDFVNMRSLKYLDISRNRLNINLQDFCKLNNIINLNLGYNSITGPLPDCVGNMTKLQRLEIDYNMLSGNIPPTIGNLSDLGVLSLEGNYFEGSFSLRSLANNSQLYFLSLSGHDNNLQLETEIPTWFPSFQLKGLRLRNLTLNRMSNSVIPSFLLHQYDLGFVDLSHNQLEGSFPSWLLQNNSDLGDLRLSGNFLMGNLILPDFIHLLSVLEISSNKIDGKLPDGIGLLLPRLTVFNISRNRCEGTLPSSLGTLQGLSTVDFSFNSFSGELQENMFARSRGMMMINLSNNLFHGKMSLNLTNLASMRILLLNNNRFSGTIEDWTLGVGAEAISQLLVLDISNNMISGRLPSWITQSINLKVLKVSNNYLEGDILVELCNMELFYLDISRNKFSGSVPSCFSNSSLKALSLRDNNLSGAIPEEFLNNSNLIALDLSYNNFSNLILPNWIYSLKNIQILLMAGMQLEGEISMQLCKLENIKILDLSHNNFNGSIPSCLFEMPFWVTDTQDLGFVSIMDTAILSSNNFFMLAYPIFITNFQAIAGYEAEFTTKGVSHSYQNNLLNYMTGLDVSNNKLSGQIPTQIEYSQAIRSLNLSNNQLWGSIPSSISKMRLIESLDLSSNNLSGEIPYEIANLNFISIFNVSNNNLSGPTPNRGQFANFDERNYGGNEYLCGPLLHRDCTSPVPSTPSDEQGEYETGLEMASFWWTFVASYIFVVVFWAIVLEPVMRRRRKKKNEKIKLEKSMDWDWRKFSWEETENVLTEETINDTLLVGSEKKIKKVEIQVGNGGNNSEEKLKKRVSRTRVVPSPRSPKRDSNLTCLVDGCKADLSNCKDYHRRHRVCERHSKIPVVIVRGEEQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESMYLTPKDFLSNFKGPRILQFSSSKLSTPDLDAKIALAPYLWKTEAEAIVDTRRKRIPAIDRKTPPNPSAAHISHVGDKQFSLKRTNNQKDINQSTPQISSCNPLPFTIASPESERGIQGISQPVNSGCALYLLSSSPSQASGLGLSCFDLPQEYYAYSKESTAILQDMMLQTRGSDGSFEAQLSPWFLTSWE 1229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6907447 6914931 + BLOR02194 Blo10g00404 65600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00404 1229 Gene3D - 950 1020 IPR036893 GO:0003677|GO:0005634
Blo10g00404 1229 Pfam SBP domain 959 1032 IPR004333 GO:0003677
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 241 467 IPR032675 -
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 468 824 IPR032675 -
Blo10g00404 1229 SUPERFAMILY L domain-like 523 813 - -
Blo10g00404 1229 Pfam Leucine rich repeat 545 602 IPR001611 GO:0005515
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 20 168 IPR032675 -
Blo10g00404 1229 SUPERFAMILY L domain-like 102 339 - -
Blo10g00404 1229 ProSiteProfiles Zinc finger SBP-type profile. 956 1033 IPR004333 GO:0003677
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 169 240 IPR032675 -
Blo10g00404 1229 SUPERFAMILY SBT domain 958 1038 IPR036893 GO:0003677|GO:0005634
Blo10g00404 1229 SUPERFAMILY L domain-like 277 641 - -
Blo10g00404 1229 PANTHER RECEPTOR-LIKE PROTEIN 14 108 856 - -
Blo10g00404 1229 ProSiteProfiles Leucine-rich repeat profile. 130 151 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00775 Blo-Chr3:32396586 Blo10g00404 Blo-Chr10:6907447 0 dispersed
Blo03g00777 Blo-Chr3:32420438 Blo10g00404 Blo-Chr10:6907447 0 dispersed
Blo04g00800 Blo-Chr4:8071757 Blo10g00404 Blo-Chr10:6907447 7.31E-31 dispersed
Blo06g01169 Blo-Chr6:35139467 Blo10g00404 Blo-Chr10:6907447 2.21E-43 dispersed
Blo10g00404 Blo-Chr10:6907447 Blo06g00322 Blo-Chr6:18467782 2.55E-58 dispersed
Blo11g00127 Blo-Chr11:962339 Blo10g00404 Blo-Chr10:6907447 9.29E-34 dispersed
Blo12g00604 Blo-Chr12:24342357 Blo10g00404 Blo-Chr10:6907447 2.48E-18 dispersed
Blo15g00202 Blo-Chr15:2094865 Blo10g00404 Blo-Chr10:6907447 2.75E-47 dispersed
Blo10g00404 Blo-Chr10:6907447 Blo06g01125 Blo-Chr6:34717935 8.18E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12826 PF03110 SBP 3.00E-30 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00404 - - mesc:110625557 588.956