Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00404 ATGTGCTTAGTCTGGGTGGCCATGGTTGTGGCTCAGTTGCAGGGATTTCGAGGGTGTGTGGAGGAAGAAAGAGTGGGGTTGCTAGCTCTTTCTCCGATGAAAGGTGTAAACACGAGTAGTGACTGTTGCGCATGGGTGGGCGTCAATTGCAGTGCAACCAGTGGGCGTGTTGAGATCCTCTCTCTTTTTGAACTAAGAAACAATGGATCGCTTTTTAAACTGAGAAACTACAACAACAAACATTTAGGGTCACACAGAAATGATGAATCTTTAGGATCTTTCTTGAATATTTCTTTGTTTCTTCCCTTTCAAGAATTGCTGGTACTCGATTTATCCTTTTGCGACATTCGTGGTTTGCTACAGCAAGCAGATTTCTGCAAAATGAACAACATTATCAAATTGAATTTGGGACATAACAGCATAACAGATTTTGTGAACATGAGAAGCTTGAAATATTTGGATATCAGCCGCAATCGTTTGAATATCAATCTTCAAGATTTCTGCAAATTGAACAACATTATCAACTTGAATTTGGGATATAACAGTATAACAGGTCCTCTTCCTGATTGTGTTGGCAACATGACTAAGCTTCAACGTCTTGAAATCGACTACAACATGCTAAGTGGAAACATACCACCAACCATTGGGAACCTCTCTGATCTTGGCGTCTTATCATTAGAAGGCAATTACTTTGAAGGTTCATTCTCTCTCCGCTCTTTGGCCAATAATTCACAACTTTATTTTCTCAGCTTATCCGGACATGACAATAATCTTCAACTGGAAACTGAAATTCCAACGTGGTTTCCTTCTTTTCAACTGAAGGGTCTCCGGCTGAGAAATTTAACCCTAAACAGAATGTCTAATTCTGTTATTCCTAGTTTCTTGTTGCATCAATATGATTTAGGGTTCGTTGACCTTTCTCATAACCAGTTAGAAGGCAGCTTTCCATCTTGGCTGTTACAGAATAACTCAGATTTGGGAGATCTAAGGTTGAGCGGAAATTTCCTTATGGGAAATCTTATCCTTCCTGACTTCATCCATCTTTTGTCTGTTCTCGAAATTTCTAGCAATAAGATTGATGGTAAGCTTCCTGATGGGATAGGATTGTTGCTACCCAGACTCACAGTTTTTAATATATCGAGGAATAGATGTGAAGGTACCCTTCCCTCTTCATTGGGGACACTACAAGGACTTAGCACTGTGGACTTTTCCTTCAACAGTTTCAGCGGCGAACTTCAAGAAAATATGTTTGCCAGAAGCAGAGGAATGATGATGATAAACCTTTCAAACAACCTTTTTCATGGTAAGATGTCTTTGAACCTGACAAACCTCGCTTCCATGAGGATCCTACTTTTGAATAACAACAGATTCAGTGGAACTATTGAGGACTGGACGCTTGGAGTTGGAGCAGAGGCTATTTCACAACTATTAGTTTTGGACATTTCTAATAACATGATTTCAGGTCGACTCCCGAGTTGGATCACTCAGTCCATAAACCTTAAAGTTCTCAAAGTCTCCAACAATTATTTAGAAGGTGATATTCTAGTTGAGCTATGCAACATGGAGCTATTTTATTTAGATATCTCCCGCAATAAGTTCTCTGGTTCTGTACCTTCTTGTTTTAGTAATTCTTCATTGAAGGCATTGTCTCTGCGAGATAACAACTTATCAGGAGCAATACCCGAAGAATTTCTAAACAACTCCAACTTAATAGCCCTTGATCTCAGTTACAATAATTTTTCTAACCTCATTCTCCCCAATTGGATCTATTCTCTAAAAAACATACAGATACTTCTGATGGCAGGAATGCAATTAGAAGGAGAAATCTCAATGCAGCTTTGCAAACTAGAAAACATCAAGATCTTGGACCTTTCACATAACAATTTCAATGGTTCTATTCCGTCGTGTTTATTTGAAATGCCTTTTTGGGTTACAGACACTCAAGATCTTGGATTTGTTTCTATTATGGATACCGCAATTTTGTCCTCCAATAACTTCTTCATGCTTGCGTATCCTATATTTATCACCAACTTTCAAGCTATAGCAGGATATGAGGCCGAATTCACTACAAAAGGGGTATCACACAGTTACCAAAACAACCTCCTTAATTACATGACTGGACTAGATGTGTCGAACAATAAATTATCCGGCCAAATTCCAACTCAAATTGAATATTCACAAGCAATCCGCAGCCTAAACTTGTCGAATAATCAACTATGGGGTTCCATACCAAGCAGCATTTCGAAAATGCGATTAATTGAGAGTTTAGACCTTTCGTCCAATAATTTGAGCGGAGAAATCCCATATGAAATCGCCAACCTTAACTTTATAAGCATCTTCAATGTCTCGAACAATAACCTATCAGGTCCTACCCCCAACAGAGGCCAATTTGCCAACTTTGATGAAAGGAACTATGGAGGAAATGAGTATCTATGCGGACCACTTCTCCACAGGGATTGCACAAGCCCCGTGCCCTCTACACCATCTGATGAACAAGGTGAATACGAAACGGGCCTTGAAATGGCGTCGTTTTGGTGGACCTTTGTAGCTTCTTACATTTTTGTGGTTGTATTCTGGGCAATAGTTCTTGAGCCTGTAATGCGTAGAAGGAGAAAGAAGAAGAACGAGAAGATTAAGTTGGAAAAATCTATGGACTGGGACTGGAGAAAATTTTCTTGGGAGGAAACTGAAAATGTATTAACTGAAGAAACAATCAACGATACCCTTTTGGTTGGATCGGAGAAGAAAATCAAGAAAGTGGAAATTCAGGTGGGTAATGGCGGAAACAATTCAGAGGAGAAATTGAAGAAGAGGGTAAGTAGAACAAGGGTGGTTCCTTCGCCGAGATCGCCGAAAAGGGATAGCAATCTGACGTGCTTGGTCGATGGTTGCAAGGCCGACCTGAGCAATTGCAAGGACTATCATCGCCGGCATAGGGTCTGTGAGCGCCACTCCAAGATTCCGGTCGTGATCGTGAGGGGCGAAGAACAACGATTTTGCCAGCAGTGTAGCAGATTCCATTCTCTGGGAGAGTTTGATGAGGTGAAAAGAAGCTGCCGTAAACGCCTGGACGGGCACAATCGGCGCCGGAGAAAGCCTCAGCCGGAATCCATGTACTTGACTCCCAAGGACTTCCTGTCCAATTTCAAAGGTCCCAGAATCTTGCAATTCAGCAGTTCAAAGCTCAGTACGCCTGATTTGGATGCAAAGATTGCGTTGGCTCCTTATCTTTGGAAAACAGAAGCTGAAGCCATAGTCGATACTCGTCGAAAACGAATTCCAGCAATAGACCGGAAAACTCCTCCAAATCCCTCGGCTGCCCATATTAGCCATGTCGGAGATAAACAATTCTCATTGAAGCGGACAAACAATCAGAAAGATATCAACCAATCAACCCCTCAAATTTCTTCCTGCAACCCACTCCCCTTCACCATCGCCTCGCCGGAAAGTGAAAGAGGCATCCAAGGGATATCGCAGCCTGTTAACTCGGGTTGTGCTCTCTATCTTCTGTCATCGTCACCATCGCAAGCTTCAGGACTTGGTCTAAGCTGCTTCGATCTTCCGCAAGAATACTACGCCTACTCGAAGGAATCGACCGCCATTCTGCAAGATATGATGCTCCAAACGAGAGGCTCTGACGGCTCGTTCGAAGCTCAGCTGTCCCCGTGGTTCCTAACTTCTTGGGAGTAG 3690 42.06 MCLVWVAMVVAQLQGFRGCVEEERVGLLALSPMKGVNTSSDCCAWVGVNCSATSGRVEILSLFELRNNGSLFKLRNYNNKHLGSHRNDESLGSFLNISLFLPFQELLVLDLSFCDIRGLLQQADFCKMNNIIKLNLGHNSITDFVNMRSLKYLDISRNRLNINLQDFCKLNNIINLNLGYNSITGPLPDCVGNMTKLQRLEIDYNMLSGNIPPTIGNLSDLGVLSLEGNYFEGSFSLRSLANNSQLYFLSLSGHDNNLQLETEIPTWFPSFQLKGLRLRNLTLNRMSNSVIPSFLLHQYDLGFVDLSHNQLEGSFPSWLLQNNSDLGDLRLSGNFLMGNLILPDFIHLLSVLEISSNKIDGKLPDGIGLLLPRLTVFNISRNRCEGTLPSSLGTLQGLSTVDFSFNSFSGELQENMFARSRGMMMINLSNNLFHGKMSLNLTNLASMRILLLNNNRFSGTIEDWTLGVGAEAISQLLVLDISNNMISGRLPSWITQSINLKVLKVSNNYLEGDILVELCNMELFYLDISRNKFSGSVPSCFSNSSLKALSLRDNNLSGAIPEEFLNNSNLIALDLSYNNFSNLILPNWIYSLKNIQILLMAGMQLEGEISMQLCKLENIKILDLSHNNFNGSIPSCLFEMPFWVTDTQDLGFVSIMDTAILSSNNFFMLAYPIFITNFQAIAGYEAEFTTKGVSHSYQNNLLNYMTGLDVSNNKLSGQIPTQIEYSQAIRSLNLSNNQLWGSIPSSISKMRLIESLDLSSNNLSGEIPYEIANLNFISIFNVSNNNLSGPTPNRGQFANFDERNYGGNEYLCGPLLHRDCTSPVPSTPSDEQGEYETGLEMASFWWTFVASYIFVVVFWAIVLEPVMRRRRKKKNEKIKLEKSMDWDWRKFSWEETENVLTEETINDTLLVGSEKKIKKVEIQVGNGGNNSEEKLKKRVSRTRVVPSPRSPKRDSNLTCLVDGCKADLSNCKDYHRRHRVCERHSKIPVVIVRGEEQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESMYLTPKDFLSNFKGPRILQFSSSKLSTPDLDAKIALAPYLWKTEAEAIVDTRRKRIPAIDRKTPPNPSAAHISHVGDKQFSLKRTNNQKDINQSTPQISSCNPLPFTIASPESERGIQGISQPVNSGCALYLLSSSPSQASGLGLSCFDLPQEYYAYSKESTAILQDMMLQTRGSDGSFEAQLSPWFLTSWE 1229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6907447 6914931 + BLOR02194 Blo10g00404 65600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00404 1229 Gene3D - 950 1020 IPR036893 GO:0003677|GO:0005634
Blo10g00404 1229 Pfam SBP domain 959 1032 IPR004333 GO:0003677
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 241 467 IPR032675 -
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 468 824 IPR032675 -
Blo10g00404 1229 SUPERFAMILY L domain-like 523 813 - -
Blo10g00404 1229 Pfam Leucine rich repeat 545 602 IPR001611 GO:0005515
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 20 168 IPR032675 -
Blo10g00404 1229 SUPERFAMILY L domain-like 102 339 - -
Blo10g00404 1229 ProSiteProfiles Zinc finger SBP-type profile. 956 1033 IPR004333 GO:0003677
Blo10g00404 1229 Gene3D Ribonuclease Inhibitor 169 240 IPR032675 -
Blo10g00404 1229 SUPERFAMILY SBT domain 958 1038 IPR036893 GO:0003677|GO:0005634
Blo10g00404 1229 SUPERFAMILY L domain-like 277 641 - -
Blo10g00404 1229 PANTHER RECEPTOR-LIKE PROTEIN 14 108 856 - -
Blo10g00404 1229 ProSiteProfiles Leucine-rich repeat profile. 130 151 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00404 - - - mesc:110625557 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00775 Blo-Chr3:32396586 Blo10g00404 Blo-Chr10:6907447 0 dispersed
Blo03g00777 Blo-Chr3:32420438 Blo10g00404 Blo-Chr10:6907447 0 dispersed
Blo04g00800 Blo-Chr4:8071757 Blo10g00404 Blo-Chr10:6907447 7.31E-31 dispersed
Blo06g01169 Blo-Chr6:35139467 Blo10g00404 Blo-Chr10:6907447 2.21E-43 dispersed
Blo10g00404 Blo-Chr10:6907447 Blo06g00322 Blo-Chr6:18467782 2.55E-58 dispersed
Blo11g00127 Blo-Chr11:962339 Blo10g00404 Blo-Chr10:6907447 9.29E-34 dispersed
Blo12g00604 Blo-Chr12:24342357 Blo10g00404 Blo-Chr10:6907447 2.48E-18 dispersed
Blo15g00202 Blo-Chr15:2094865 Blo10g00404 Blo-Chr10:6907447 2.75E-47 dispersed
Blo10g00404 Blo-Chr10:6907447 Blo06g01125 Blo-Chr6:34717935 8.18E-61 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00099 BCT 161 974 SBP-box Gene Family AT2G47070 56.9 2.2e-245 845.5
Blo07g00617 BCT 163 1012 SBP-box Gene Family AT2G47070 54.5 1.4e-239 826.2
Blo07g00126 . 3 428 SBP-box Gene Family AT2G47070 50.1 3.3e-108 389.8
Blo10g00099 BCT 10 974 SBP-box Gene Family AT3G60030 54.8 1.0e-276 949.9
Blo07g00617 BCT 2 1012 SBP-box Gene Family AT3G60030 52.1 2.1e-269 925.6
Blo07g00126 . 3 428 SBP-box Gene Family AT3G60030 50.6 2.5e-102 370.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50570 67.0 4.2e-37 152.5
Blo10g00099 BCT 161 974 SBP-box Gene Family AT2G47070 56.9 2.2e-245 845.5
Blo07g00617 BCT 163 1012 SBP-box Gene Family AT2G47070 54.5 1.4e-239 826.2
Blo07g00126 . 3 428 SBP-box Gene Family AT2G47070 50.1 3.3e-108 389.8
Blo10g00099 BCT 10 974 SBP-box Gene Family AT3G60030 54.8 1.0e-276 949.9
Blo07g00617 BCT 2 1012 SBP-box Gene Family AT3G60030 52.1 2.1e-269 925.6
Blo07g00126 . 3 428 SBP-box Gene Family AT3G60030 50.6 2.5e-102 370.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50570 67.0 4.2e-37 152.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50670 67.0 4.2e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000485 5 2 8 15 5 2 1 1 1 4 2 4 1 6 6 1 4 5 0 1 2 2 0 4 6 1 4 4 1 8 106
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12826 PF03110 SBP 3.00E-30 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00404 Blo_Chr10 FPKM 28.800329 30.184368 58.729031 54.704567 5.326689 6.529585 5.719254 77.047218 80.085365 77.475464