Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00424 ATGGCTCATCCAGCTACTTCTACTGTCCTCTTCTTCCTTATTTCTACTCTCCTTTTTACTCTTTTTCATAATTTTGCTACTTCCACACCAGAGTTTGAAAACCCTCATTCAGTAGTGGAAGAAGTTCAAAGGAGTATCAATGCATCAAGTTCTCGAAGGAGCCTTGCCTCCTCCTCTTGTGGAACCGGAAACCCCATCGATGATTGTTGGAGGTGTGAACCCAATTGGGAGTCAAACCGGCAACGGCTAGCCGATTGTGCAATTGGGTTCGGAAAGAATGCGATGGGAGGGAAAAATGGTCGAATCTATGTAGTCACCGACCCGAATGACGACGATCCAGTGAACCCTAGGCCCGGAACTCTTCGATATGCCGTCATACAAGATGAACCCTTATGGATCATTTTTAACAGAGATATGGTGATTAAATTAAGACAAGAGCTGGTAATGAATTCTTTCAAGACCATTGATGGTAGAGGGGCAAGTGTTCATATTGCTGGAGGGCCATGCATAACCATACATTATGCTACAAACATCATCATACATGGAATTCACGTACATGATTGCCAGCAAGGTGGGAATGGTAATATACGGGACTCCCCACGACACTCCGGGTGGTGGACCGTATCTGATGGTGACGGAATTTCGATCTTTGGTGGGAGGCATGTGTGGGTGGACCATTGTTCTCTTTCGAATTGTCGTGACGGTCTGATCGATGCCATCCATGGCTCGACGGCAATTACCATCTCGAACAACTATATGACTCATCATGACAAGGTTATGCTTTTAGGCCACAGCGATTATTATGGGCAAGATAAGAACATGCAAGTTACTATTGCCTTTAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCCAGATGTAGGCTAGGATTCTTCCATGTGGTGAACAATGACTACACTCATTGGGAAATGTATGCAATTGGAGGGAGTGCAAATCCCACCATTTACAGCCAAGGGAATAGATTTCTAGCTCCTGATGTAAGATTCAGAAAAGAGGTGACTAAACATGAAGATGCACCTCAAAGTGAATGGATGCATTGGAACTGGCGATCCGAAGGAGACTTGCTGTTGAACGGCGCGTATTTCCGGGAGTCAGGAGCTGGCGCATCATCTAGCTACGCCAGGGCACACAGCCTCGGTGCCAAACCAGCTTCTTTTGTTGGCTCCATGACCGTGGCTGCCGGTGCACTTAGTTGCCGGAAGGGTTCTCATTGCTAG 1239 46.33 MAHPATSTVLFFLISTLLFTLFHNFATSTPEFENPHSVVEEVQRSINASSSRRSLASSSCGTGNPIDDCWRCEPNWESNRQRLADCAIGFGKNAMGGKNGRIYVVTDPNDDDPVNPRPGTLRYAVIQDEPLWIIFNRDMVIKLRQELVMNSFKTIDGRGASVHIAGGPCITIHYATNIIIHGIHVHDCQQGGNGNIRDSPRHSGWWTVSDGDGISIFGGRHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDYYGQDKNMQVTIAFNHFGEGLVQRMPRCRLGFFHVVNNDYTHWEMYAIGGSANPTIYSQGNRFLAPDVRFRKEVTKHEDAPQSEWMHWNWRSEGDLLLNGAYFRESGAGASSSYARAHSLGAKPASFVGSMTVAAGALSCRKGSHC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7553723 7555420 - BLOR02214 Blo10g00424 65620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00424 412 PANTHER PECTATE LYASE 10 409 - -
Blo10g00424 412 SUPERFAMILY Pectin lyase-like 46 383 IPR011050 -
Blo10g00424 412 PANTHER PECTATE LYASE 18-RELATED 10 409 IPR045032 GO:0030570
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 110 135 IPR018082 -
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 354 378 IPR018082 -
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 383 406 IPR018082 -
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 86 103 IPR018082 -
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 146 162 IPR018082 -
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 210 231 IPR018082 -
Blo10g00424 412 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Blo10g00424 412 Pfam Pectate lyase 144 329 IPR002022 -
Blo10g00424 412 Gene3D - 63 405 IPR012334 -
Blo10g00424 412 SMART amb_all 138 335 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00424 Blo-Chr10:7553723 Blo14g00306 Blo-Chr14:3136127 0 dispersed
Blo10g00424 Blo-Chr10:7553723 Blo16g00243 Blo-Chr16:5643367 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00424 K01728 - jre:109009664 694.886