Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Blo10g00430	ATGGCTTCCGATTCTCCTGCTAACTTCAGTAATGGTGAGATTTTTGTTTTACTTTTTCCCAGACCTTCGTCGCCTGATGATTTCCTCTCCAGTCCGATAGGGAATACGTTCTCGTCTCCGGGGAGTGTCTCTCGTCCAAGAAGGCAGCGTCGATCGTCTACTCCGCTGGAATCTGGCACTCCTCCACCTCCTCAATCTCGATTTGCAAGATTGGAAACAACACCAACAGCGGCTGCATCACGTGGTCAACGAAGAGCTGGGGATCGAAGGTCCTCTGGAACAACGCCTATGGCGGCCACTCCTTCTTCTACTGATGATGTTCCACTTTCATCCGAAGGTGGCGAGGGCTACGACATGGATGAAGACCACCCCACATTTGTCTGGGGGACGAATATAAGCGTCGATGATGTTAAAGGGGCGATTATTCGTTTCTTGAAACATTTCCGGGATTCCAGAGCTTCACAATCGGAAGGAGAATTTATTACTGATGGGAAGTATACGGAGGCAATCAAACGGGTTCTTGAGATTGAAGGAGATTCTCTGGATGTTGATGCCCGTGATGTATTTGACTATGATTCCGATTTGTATACTAAGATGGTGAGGTACCCCCTTGAAGTTCTGGCAATTTTTGATATTGTTTTGATGGAAATGGTCCCCCAAATTAACCCTCTATTTGAGAAGCATATTCAAACACGGATTTACAATCTCAAAACCTCCACTTCAATGAGAAATCTCAATCCATCCGACATTGAGAGGATGGTATCACTGAAAGGAATGATTATTCGATGTAGTTCCATAATACCTGAGATTAGAGAAGGGATGTTTAGGTGTCTAGTCTGTGGGTACTACTCGGATCCCATTGCAATAGAGAGAGGACGAATCACCGAACCAACTGTTTGCTTGAAAGAAGAATGCCAAGCAAAACATTCCATGACTCTAGTTCACAATCGATGCAGATTCGCTGACAAGCAGATTGTGAGGCTTCAGGAGACTCCTGATGAGATTCCAGAAGGGGGCACACCACACACTGTGAGCTTGTTGATGCATGACAAGCTGGTTGATTCTGGAAAGCCGGGTGACAGAGTTGAGGTTACTGGGATTTACCGGGCGATGACTGTGAGAGTTGGACCTACACAGAGAACTGTGAAGTCATTATTTAAGGCGTATTGTCTTCATATAAAGAAGGCTGATAAGTCAAGAATGCAAGTGGAGGATCTTATGGAAGTAGAAAATCAGTTGGGCTCGAATGTGGATGCTCTCTCTTTTGATGAAGTGACTGTGGACAAGTTGAAAGATCTATCAAAATTACCTGACATATACAACAGGCTAACCAGATCGTTGGCCCCAAACATTTGGGAGTTAGATGATGTTAAGAAAGGCCTCCTTTGCCAGCTTTTTGGTGGGAATGCTTTAAAGTTGCCATCTGGTGCTAGTTTCCGTGGAGATATAAACGTACTTCTTGTTGGTGATCCTGGAACTAGCAAGTCTCAGCTACTCCAATACATACACAAGCTATCTCCTCGAGGCATTTACACAAGTGGAAGGGGGAGTTCTGCTGTTGGTTTGACCGCATATGTTACTAAAGATCCAGAAACGGGGGAAACGGTTCTGGAGAGTGGAGCATTGGTCTTGAGTGACAGGGGCATCTGCTGTATTGATGAATTTGATAAAATGTCTGATAATGCAAGGAGCATGTTACATGAGGTTATGGAACAGCAAACAGTTTCTATAGCTAAGGCAGGAATCATTGCCTCTCTGAATGCAAGGACCTCAGTGTTGGCTTGTGCAAATCCAAGTGGTTCACGTTACAATCCTCGTTTATCTGTGATTGACAACATACACCTTCCTCCAACTTTATTGTTTGACTTGATTTACTTAATTCTTGATAAAGCTGATGAGGATACAGATAGGCGCCTTGCGAAGCATATTGTTTCATTACATTTTGAGAATCCCGAGATTTCAGAGCAAGATTTCTTGGATCTTCCTACATTAACTGCATATGTGAGTTACGCTCGAAAGCATGTTCAGCCACAATTATCAGATGAGGCTGCGGAAGAATTAACTCGAGGTTATGTAGAGTTGAGGAGGAGAGGAAATTTCCCAGGCAGTAGTAAAAAGGTTATAACAGCTACTCCCAGGCAGATTGAAAGTTTAATACGTCTCAGTGAAGCCCTTGCCCGGATTCGTTTCTCAGAGTGGGTTGAAAAGCATGACGTAGTTGAGGCATTTCGACTTCTTGAAGTTGCAATGCAACAATCAGCAACAGATCACTCGACTGGAACAATAGATATGGATCTGATAACAACTGGAGTTTCAGCTAGTGAAAGAATGAAACGAGAAAGTGTGCTCTCCGCAACCCGCAATATTATCATGGAGAAGATGCAGCTTGGCGGCCCCTCCATGCGATTACTGGAGTTGCTGGAGGAGCTAAAGAAGCAAAGCTCCAGTAGTGAAGTCCACCTCAATGATCTGAGGACTGCAGTTGCAACTCTAGCAAGCGAGGGATTTGCAGGAATCCAAGTCTCTGTCCTGCTTAGAGAGCTTCCGTCGCAGTCGTTCTGTCGTTCGAGACTGAGCCAGTTCGCACTTCGCAGTCGTTCCATCGTTCGTCCGAGCTCTGTAGCCTCAGTGGCTGTCGTCGCGAGCCCGGGCTGGGAATCGGACTCAGTCGTCGCTGTCGTCGTCGCGAGCCCAGTCCTGCTCAGAGAGCTTCGCCTTCACGCGAGCTCTGTCCCCGTCGTCGCGAGGGGGACTCAGTCCCCTGTCCCTGACTCCCCGTCGTCGCGAGCTCAAGCTCAGGCTCGGGTAGAGGTCTGGCGGGCTGGCTCGCTGGGCCAGCCCGCCAGGCTCGAGAGCCCGGGCTCGGTGAGCTCGCGAGCCCGGGTGCTCGGGCTCTGCTCGACTCGTCTACCGGGCCCGGGCCGAGCCCGCTCGGTTACTGTAGCGGTCCGAGCCGAGCTCGGACTGCTACAGTAA	2976	47.88	MASDSPANFSNGEIFVLLFPRPSSPDDFLSSPIGNTFSSPGSVSRPRRQRRSSTPLESGTPPPPQSRFARLETTPTAAASRGQRRAGDRRSSGTTPMAATPSSTDDVPLSSEGGEGYDMDEDHPTFVWGTNISVDDVKGAIIRFLKHFRDSRASQSEGEFITDGKYTEAIKRVLEIEGDSLDVDARDVFDYDSDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIYNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREGMFRCLVCGYYSDPIAIERGRITEPTVCLKEECQAKHSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDSGKPGDRVEVTGIYRAMTVRVGPTQRTVKSLFKAYCLHIKKADKSRMQVEDLMEVENQLGSNVDALSFDEVTVDKLKDLSKLPDIYNRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINVLLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLFDLIYLILDKADEDTDRRLAKHIVSLHFENPEISEQDFLDLPTLTAYVSYARKHVQPQLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKHDVVEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMKRESVLSATRNIIMEKMQLGGPSMRLLELLEELKKQSSSSEVHLNDLRTAVATLASEGFAGIQVSVLLRELPSQSFCRSRLSQFALRSRSIVRPSSVASVAVVASPGWESDSVVAVVVASPVLLRELRLHASSVPVVARGTQSPVPDSPSSRAQAQARVEVWRAGSLGQPARLESPGSVSSRARVLGLCSTRLPGPGRARSVTVAVRAELGLLQ	991

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
10	7793506	7802335	-	BLOR02220	Blo10g00430	65626

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Blo10g00430	991	Pfam	MCM AAA-lid domain	663	749	IPR041562	-
Blo10g00430	991	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	450	763	IPR027417	-
Blo10g00430	991	SMART	AAA_5	481	654	IPR003593	-
Blo10g00430	991	MobiDBLite	consensus disorder prediction	20	122	-	-
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	568	581	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	540	554	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	592	604	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	480	495	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	ProSitePatterns	MCM family signature.	548	556	IPR018525	GO:0003677\|GO:0005524\|GO:0006260
Blo10g00430	991	MobiDBLite	consensus disorder prediction	28	56	-	-
Blo10g00430	991	ProSiteProfiles	MCM family domain profile.	439	643	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	PANTHER	DNA REPLICATION LICENSING FACTOR MCM4	93	837	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	601	618	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	264	277	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	455	466	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	315	327	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Blo10g00430	991	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	751	760	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Blo10g00430	991	Gene3D	-	242	381	IPR012340	-
Blo10g00430	991	Pfam	MCM N-terminal domain	140	238	IPR027925	-
Blo10g00430	991	Pfam	MCM OB domain	242	371	IPR033762	-
Blo10g00430	991	Gene3D	-	269	321	-	-
Blo10g00430	991	Gene3D	-	131	236	-	-
Blo10g00430	991	MobiDBLite	consensus disorder prediction	89	109	-	-
Blo10g00430	991	CDD	MCM4	442	749	-	-
Blo10g00430	991	Pfam	MCM P-loop domain	427	647	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	Gene3D	-	756	837	IPR036388	-
Blo10g00430	991	SMART	mcm	238	751	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	Gene3D	-	424	755	IPR027417	-
Blo10g00430	991	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	93	837	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Blo10g00430	991	SUPERFAMILY	Nucleic acid-binding proteins	160	388	IPR012340	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Blo10g00430	K02212	MCM4, CDC54; DNA replication licensing factor MCM4 [EC:5.6.2.3]	-	csv:101211850	1367.83

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Blo03g01396	Blo-Chr3:40460436	Blo10g00430	Blo-Chr10:7793506	3.20E-102	dispersed
Blo04g01396	Blo-Chr4:33570200	Blo10g00430	Blo-Chr10:7793506	6.79E-43	dispersed
Blo06g00534	Blo-Chr6:27652571	Blo10g00430	Blo-Chr10:7793506	3.63E-107	dispersed
Blo08g00626	Blo-Chr8:24697458	Blo10g00430	Blo-Chr10:7793506	4.06E-109	dispersed
Blo09g00200	Blo-Chr9:8754486	Blo10g00430	Blo-Chr10:7793506	4.03E-20	dispersed
Blo09g00553	Blo-Chr9:16812915	Blo10g00430	Blo-Chr10:7793506	8.02E-87	dispersed
Blo10g00430	Blo-Chr10:7793506	Blo14g00834	Blo-Chr14:29639199	1.24E-90	dispersed

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Blo03g00974	.	145	882	Core DNA Replication Machinery Family	AT4G14700	65.6	2.2e-283	971.8
Blo03g00975	.	123	719	Core DNA Replication Machinery Family	AT4G14700	57.4	7.9e-217	750.7
Blo03g00974	.	80	882	Core DNA Replication Machinery Family	AT4G12620	62.7	2.4e-290	995.0
Blo03g00975	.	123	719	Core DNA Replication Machinery Family	AT4G12620	58.0	1.3e-222	770.0
Blo17g00848	.	206	531	Core DNA Replication Machinery Family	AT2G37560	62.7	2.8e-123	438.7
Blo01g00744	.	1	408	Core DNA Replication Machinery Family	AT2G01120	54.3	5.0e-122	434.9
Blo01g00205	.	3	527	Core DNA Replication Machinery Family	AT4G29910	57.7	5.4e-172	601.3
Blo10g00449	.	1	264	Core DNA Replication Machinery Family	AT1G26840	69.3	1.7e-94	342.8
Blo01g00424	.	452	676	Core DNA Replication Machinery Family	AT1G26840	68.4	1.0e-78	290.4
Blo15g00779	.	1	814	Core DNA Replication Machinery Family	AT1G79150	56.2	1.5e-234	809.7
Blo15g00681	.	1	539	Core DNA Replication Machinery Family	AT1G79150	52.1	8.0e-132	468.4
Blo03g01396	.	1	921	Core DNA Replication Machinery Family	AT1G44900	75.6	0.0e+00	1335.5
Blo14g00834	.	48	628	Core DNA Replication Machinery Family	AT5G46280	78.8	2.6e-259	891.3
Blo10g00430	.	22	836	Core DNA Replication Machinery Family	AT2G16440	72.0	0.0e+00	1130.5
Blo01g00598	.	1	709	Core DNA Replication Machinery Family	AT2G07690	76.8	6.9e-313	1069.7
Blo08g00626	.	137	962	Core DNA Replication Machinery Family	AT5G44635	72.0	0.0e+00	1152.9
Blo06g00534	.	15	719	Core DNA Replication Machinery Family	AT4G02060	84.8	0.0e+00	1204.9
Blo14g00089	BCT	25	548	Core DNA Replication Machinery Family	AT2G29680	53.7	4.7e-143	505.0
Blo13g01051	BCT	26	524	Core DNA Replication Machinery Family	AT2G29680	54.0	1.8e-142	503.1
Blo14g00089	BCT	1	518	Core DNA Replication Machinery Family	AT1G07270	51.4	4.3e-130	461.8
Blo13g01051	BCT	24	493	Core DNA Replication Machinery Family	AT1G07270	52.8	1.1e-128	457.2
Blo15g00359	.	1	594	Core DNA Replication Machinery Family	AT3G25100	76.6	2.4e-255	878.2
Blo06g00379	.	1	594	Core DNA Replication Machinery Family	AT3G25100	77.1	9.2e-255	876.3
Blo09g00553	.	22	795	Core DNA Replication Machinery Family	AT3G09660	72.6	0.0e+00	1090.1
Blo04g01396	.	6	361	Core DNA Replication Machinery Family	AT2G14050	73.8	1.9e-165	579.7
Blo06g00837	.	1	964	Core DNA Replication Machinery Family	AT1G77320	50.5	1.6e-259	892.9
Blo05g00261	.	853	1159	Core DNA Replication Machinery Family	AT4G02110	58.1	5.6e-102	369.8
Blo10g00626	.	101	299	Core DNA Replication Machinery Family	AT1G80190	70.3	2.5e-79	292.0
Blo02g00887	.	38	182	Core DNA Replication Machinery Family	AT3G12530	70.3	1.8e-58	222.2
Blo13g00859	CCT	479	644	Core DNA Replication Machinery Family	AT1G19080	65.1	1.4e-60	229.6
Blo13g00859	CCT	479	644	Core DNA Replication Machinery Family	AT3G55490	65.1	1.4e-60	229.6
Blo04g01050	.	1	1612	Core DNA Replication Machinery Family	AT5G67100	56.9	0.0e+00	1704.5
Blo06g00822	.	130	744	Core DNA Replication Machinery Family	AT1G67630	55.8	1.0e-195	680.2
Blo01g00167	.	1	435	Core DNA Replication Machinery Family	AT1G67320	64.3	1.7e-182	636.0
Blo05g00533	.	4	861	Core DNA Replication Machinery Family	AT5G63960	75.7	0.0e+00	1338.9
Blo07g01274	.	71	477	Core DNA Replication Machinery Family	AT2G42120	68.8	1.4e-170	596.3
Blo01g00167	.	1	435	Core DNA Replication Machinery Family	AT1G67320	64.3	1.7e-182	636.0
Blo14g00223	.	3	2123	Core DNA Replication Machinery Family	AT1G08260	68.5	0.0e+00	2870.5
Blo14g00223	.	9	2238	Core DNA Replication Machinery Family	AT2G27120	65.4	0.0e+00	2850.5
Blo15g00024	.	19	464	Core DNA Replication Machinery Family	AT5G22110	69.5	1.2e-178	623.2
Blo08g00066	.	388	1290	Core DNA Replication Machinery Family	AT5G22010	66.4	4.3e-304	1040.8
Blo02g01098	.	3	355	Core DNA Replication Machinery Family	AT1G63160	83.9	3.1e-167	584.7
Blo11g00085	.	1	339	Core DNA Replication Machinery Family	AT5G27740	79.4	2.7e-153	538.5
Blo12g01123	.	26	352	Core DNA Replication Machinery Family	AT1G21690	79.6	9.7e-145	510.0
Blo18g00180	.	1	362	Core DNA Replication Machinery Family	AT1G77470	78.1	2.9e-158	555.1
Blo16g00969	.	26	615	Core DNA Replication Machinery Family	AT2G06510	68.9	1.5e-247	852.4
Blo03g00091	.	34	725	Core DNA Replication Machinery Family	AT2G06510	50.5	1.3e-198	689.9
Blo06g01214	.	1	625	Core DNA Replication Machinery Family	AT5G08020	67.1	1.3e-243	839.3
Blo15g00339	.	1	634	Core DNA Replication Machinery Family	AT5G08020	65.7	8.5e-240	826.6
Blo06g01214	.	1	619	Core DNA Replication Machinery Family	AT5G61000	66.3	1.4e-240	829.3
Blo15g00339	.	1	628	Core DNA Replication Machinery Family	AT5G61000	65.8	5.2e-240	827.4
Blo03g00091	.	8	853	Core DNA Replication Machinery Family	AT4G19130	51.3	4.1e-226	781.6
Blo18g00682	.	169	531	Core DNA Replication Machinery Family	AT5G26680	84.0	1.0e-175	613.2
Blo13g00680	.	255	540	Core DNA Replication Machinery Family	AT2G25100	68.5	3.4e-111	398.3
Blo08g00019	.	2	784	Core DNA Replication Machinery Family	AT1G08130	67.2	3.6e-291	997.7
Blo08g00019	.	160	784	Core DNA Replication Machinery Family	AT1G49250	65.5	3.7e-233	804.7

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0007588	1	2	1	1	1	1	3	1	1	1	1	1	2	1	1	2	1	1	2	1	1	1	1	1	1	1	1	1	1	1	36

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Blo10g00430	Blo_Chr10	FPKM	9.263441	7.355345	2.025965	2.17337	1.216777	0.0	0.0	0.609354	0.794477	0.910786