Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00672 ATGAACTCGACAGTGTCCCTCGCAGAAGAGCAAGCGGAACTACTGAAAAAGGATGGCAACACTTACTACACGAAAGGTCGCCTTGGAGCTGCCATAGATGCCTATACCGGGGCAATTACGTTATGCCCAAATGTTCCTGTGTATTGGACAAACAGAGCATTATGCCATCGCGAACGGAATGACTGGGAGAAGGTGGAGGAGGACAGTAGGAAAGCTATTGAGGTCGACAGCAGTTATGCCAAGGCTCATTATATGCTGGGACTAGCATTATCAAAGCAAAAACAATATCCTGAAGGAATCAAGCAATTAGAGAAGGCGTTGGAACTCTGTAAAGGTGTGAACCAGAAGATTCACTTTGTAGAAGACATTTGGAAAGAACTTGCAAAAGCGAAGTACATGGAGTGGGAGATAGCGTCCACTGCCAGATTGTGTGAATTGCGAAGCTTGAAGGAGGTTTGTATGAGAGCTCTTGAGCAAATGCATTTTCTTGAAAACTCAGAGCCTGAAGAAGTATTTGATGAAGCTTATTTTTTCCACATGAAACAAATGGATGCTTTAGATACTATATTTAAGAAAGCTTCAGAGGCAGATGTGCAGACTGAGGTTCCGGATTATTTATGTTGTAAAATAACGCTCGATATTCTCCGGGATCCTGTCATTACTCCTAGCGGTATTACATACGAGAGAGCAGCGATTCTCGACCATATTGACAAGGTGGGGATGTTCGATCCCGCCACGAGGGAAACGCTTGACGAATCGCAGCTTGTGCCAAACTTAGCAATTAAAGAAGCAGTGGAAGCCTTCATAGACAAACACAGATGGGCATATCAGACGGATTGA 840 44.17 MNSTVSLAEEQAELLKKDGNTYYTKGRLGAAIDAYTGAITLCPNVPVYWTNRALCHRERNDWEKVEEDSRKAIEVDSSYAKAHYMLGLALSKQKQYPEGIKQLEKALELCKGVNQKIHFVEDIWKELAKAKYMEWEIASTARLCELRSLKEVCMRALEQMHFLENSEPEEVFDEAYFFHMKQMDALDTIFKKASEADVQTEVPDYLCCKITLDILRDPVITPSGITYERAAILDHIDKVGMFDPATRETLDESQLVPNLAIKEAVEAFIDKHRWAYQTD 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21598819 21602630 + BLOR02462 Blo10g00672 65868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00672 279 CDD RING-Ubox_CHIP 202 268 IPR045202 -
Blo10g00672 279 Coils Coil 146 166 - -
Blo10g00672 279 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Blo10g00672 279 SUPERFAMILY TPR-like 5 129 IPR011990 GO:0005515
Blo10g00672 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842|GO:0016567
Blo10g00672 279 SMART Ubox_2 205 268 IPR003613 GO:0004842|GO:0016567
Blo10g00672 279 SMART tpr_5 46 79 IPR019734 GO:0005515
Blo10g00672 279 SMART tpr_5 80 113 IPR019734 GO:0005515
Blo10g00672 279 SMART tpr_5 12 45 IPR019734 GO:0005515
Blo10g00672 279 Pfam U-box domain 202 274 IPR003613 GO:0004842|GO:0016567
Blo10g00672 279 Pfam Tetratricopeptide repeat 19 44 IPR019734 GO:0005515
Blo10g00672 279 Gene3D Tetratricopeptide repeat domain 5 142 IPR011990 GO:0005515
Blo10g00672 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 278 IPR013083 -
Blo10g00672 279 PANTHER OS08G0113300 PROTEIN 7 278 - -
Blo10g00672 279 ProSiteProfiles TPR repeat profile. 12 45 IPR019734 GO:0005515
Blo10g00672 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 278 IPR045200 GO:0000209|GO:0061630
Blo10g00672 279 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
Blo10g00672 279 SUPERFAMILY RING/U-box 194 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00672 Blo-Chr10:21598819 Blo07g01020 Blo-Chr7:29928841 1.15E-69 dispersed
Blo10g00672 Blo-Chr10:21598819 Blo04g01074 Blo-Chr4:15620449 5.72E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00672 K09561 - csv:101215457 389.037