Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00673 ATGGCGAAGACTGGTGTGTTCGATTCTGATCCGGCGGTGATGGCGAAGACGGCGGAGTTGAAGAGGAAATTGCAGAGACTCGCTAGGGTTATCATAGACGATGATGATTACAGCGCCGAAATAATCGATCAGGCTAAAGATACGCTCTTAGCGCTGAAGGAATTGAGGCTGAGTAAGCGATCTTTGTCTTTGAAGCATCTCGATTCTCCGATTTTCCCTGAAGAGTATCGTTGCCCTCTTTCCAAAGAAATGATGAGAGATCCTGTGATCGTCTCTACCGGTCAGACCTATGACAGAACCTTCATCCAAAAATGGCTGAAAGCAGGAAATAGAACATGCCCCAGGACTCAACTTGCGCTTTCACACACAATGCTTACTCCTAATCACTTAATTCGGGAGATGATATATCAATGGTGTAAGAGCAGAGGAATTGAATTATCAGATTCTGTTCACTATCCCAACGACGAAGGTGTAACAGAAGCAGATCGAGGTCATTTTCTTGATTTGCTCAAGAAGATGTCATCCTCCACAATTTCTGAGCAGAAGGAAGCAGCAAAAGAGCTACGATTGTTGACAAAGCGGATTCCTTCATTCCGGGCTCTTTTCAGCGACATTCCAAACTCTATCCAGTCTTTACTCCTACCAATCTCTCATGGGGAAATGCAAAGTAGTACTGATTCTGATCTTCAAGAAGATGTAATCACAACCCTTTTGAATTTGTCAATCCATGACAACAACAAGAAGCTGGTTGCTGAATTTCCAACTGTAATTCCTCTTCTCATGGAAGCACTAAGATCAGGAACGATAGAAACAAGGACCAATGCGGCTGCAACCCTTTTCACTTTATCAGCCCTCGATTCAAACAAGGCCCTGATAGGGAAATCAGGAGCATTAAAACCTCTCATAGATCTCTTGGAAGAGGGGCATCCGTTGGCCATGAAAGACGTAGCTTCTGCAATATTTAATCTCTGTATAATCCACGAGAACAAGGCAAGAGCAGTCCAAGAAGGGGCCATCGGAGTGATTTTGAGGAAGCTGATGAAAAATGTCCATGTCGATGAGTTATTAGCCATTCTTGCAATGCTTTCGGGCAATCAGATGGCTGTTGAGGAAATGGGGGAGGTCGAAGCCGTTCTATGCTTGCTCAGCATAATCCGGGACAATCCTTGTGCGAGAAACAAGGAGAATAGCATCGCAATTCTCCACACGATCTGTTTAAATGATCGATCGAGGTGGAAGGAAATGAGGGAAGCTGAGAAAACCTATGGTTTGATCTCCGATCTTGCTCAGAACGGAACATCAAGAGCGAAAAGAAAAGCTAACGGCATACTTGAGAGACTGAACCGGGCCGTTAACATCACTCACACTGCCTAA 1374 44.61 MAKTGVFDSDPAVMAKTAELKRKLQRLARVIIDDDDYSAEIIDQAKDTLLALKELRLSKRSLSLKHLDSPIFPEEYRCPLSKEMMRDPVIVSTGQTYDRTFIQKWLKAGNRTCPRTQLALSHTMLTPNHLIREMIYQWCKSRGIELSDSVHYPNDEGVTEADRGHFLDLLKKMSSSTISEQKEAAKELRLLTKRIPSFRALFSDIPNSIQSLLLPISHGEMQSSTDSDLQEDVITTLLNLSIHDNNKKLVAEFPTVIPLLMEALRSGTIETRTNAAATLFTLSALDSNKALIGKSGALKPLIDLLEEGHPLAMKDVASAIFNLCIIHENKARAVQEGAIGVILRKLMKNVHVDELLAILAMLSGNQMAVEEMGEVEAVLCLLSIIRDNPCARNKENSIAILHTICLNDRSRWKEMREAEKTYGLISDLAQNGTSRAKRKANGILERLNRAVNITHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21604615 21606514 - BLOR02463 Blo10g00673 65869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00673 457 CDD RING-Ubox_PUB 76 117 IPR045210 -
Blo10g00673 457 Pfam Armadillo/beta-catenin-like repeat 288 324 IPR000225 GO:0005515
Blo10g00673 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 455 - -
Blo10g00673 457 Gene3D - 148 452 IPR011989 -
Blo10g00673 457 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Blo10g00673 457 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Blo10g00673 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Blo10g00673 457 PANTHER U BOX DOMAIN-CONTAINING 5 455 - -
Blo10g00673 457 SUPERFAMILY RING/U-box 72 146 - -
Blo10g00673 457 SUPERFAMILY ARM repeat 167 447 IPR016024 -
Blo10g00673 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Blo10g00673 457 SMART arm_5 285 325 IPR000225 GO:0005515
Blo10g00673 457 SMART arm_5 243 284 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00283 Blo-Chr5:3109281 Blo10g00673 Blo-Chr10:21604615 0 dispersed
Blo10g00295 Blo-Chr10:4367438 Blo10g00673 Blo-Chr10:21604615 3.97E-106 dispersed
Blo10g00673 Blo-Chr10:21604615 Blo04g00330 Blo-Chr4:2614351 1.57E-100 dispersed
Blo13g00608 Blo-Chr13:28499293 Blo10g00673 Blo-Chr10:21604615 4.96E-36 dispersed
Blo10g00673 Blo-Chr10:21604615 Blo06g00511 Blo-Chr6:27208841 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00673 - - mnt:21398908 662.914