Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00718 ATGGCGTCTGAGAGTGCTGAAGAATCTGTTAACCGACCATTTAAAGTGGAGCACATGTCCACAGTTTTGGCACATGATGTACGTGCAATTGGAGATGAAATTGTTATAGTGGTGCATTCCGTCTCGGCAACTCTAGACGAGGAGGAGCTCCGTTCATTATGCGAATCCAGTGACAAAAATATGGACATGGCTGAGAAAGATCTGCTCATAAAGGCGATACCTTTTCGAGGAGGAAAGCAGATCAGGAAGAAACTTGGGGAGAAAAAAGCCATGAAAGGAATATCAGTTTCGCCGGCGAATAATTGGAGACCAACTTCATCGGAAAAATCGATTAAAGACTCCAACTTTCGTGCTTACTCAAAGCTGAATCTTCTCCAATTCAGCAACAGGAAAGACCCATCAAGCTTAAGAACCCAAATTCCTTCCTTTTCCTTGAATTCCTCGAACCCGTCAGCTCCGCCGCTTGTGGTTGTGGGTTCGGCTAATGCAGATATTTACGTCGAGATCGAGAGGCTACCCATCGAGGGCGAGACCATCTCTGCCAAGTCGGGTCAGACGTTGGCCGGAGGGAAGGGCGCAAACCAGGCCGCTTGCGGTGGAAAGCTAGCGTACCCGACCTACTTTGTGGGTCAGGTGGGCGAGGATGCTCACGGGAAGTTGATAGCTGAAGCTCTTGAGAATGGCGGAGTTCATCTTGATCGTTTGACTACTGTCAGTGCCGCACCAACCGGGCATGCAGTGGTGATGCTGCAGCCTGATGGGCAGAACTCCATTATCATTGTGGGTGGAGCTAACACGAATTGTTGGCCTGAGAATCTCAGCGACGAGGACATGGAAATCATTAGGAAAGCTGGAATTGTTTTGCTTCAGAGAGAAATTCCAGATTCTGTCAACATTCAAGTCGCCAAGGCTGCAAGGAGTGCCAATGTTCCGGTCATTTTAGATGCCGGAGGAATGGAAGGAGATATCCCACGAGAACTACTTAGCTTGGTCGATATTTTTAGCCCAAATGAAAGTGAACTCCATCGTTTAACTGGACTCCCTACTAAAAGCTTCAACGATGTTAGCCAAGCTGTGGAAAAATGCCATAAAATGGGTGTAAAGCAAGTTCTCGTAAAGCTCGGGGAAAAGGGGTCGGGTCTATTTATAGAGGGGCAAGAACCAATCGTCCAATCCATTTTGCCGGCTAAACGAGTTGTAGATACTACTGGTGCTGGCGATACTTTTACTGCATCTTTTGCTGTGGCCGTAGTTGAAGGCAAGTCCATGAAAGAATGCATGAAGTTTGCAGCTGCTGCAGCTTCTCTTTGTGTTCAAGTGAAGGGTGCAATTCCTAGCATGCCTGATAGGACATCAGTTTTGAACCTTCTTCAATCTGGTGTGTGA 1386 47.4 MASESAEESVNRPFKVEHMSTVLAHDVRAIGDEIVIVVHSVSATLDEEELRSLCESSDKNMDMAEKDLLIKAIPFRGGKQIRKKLGEKKAMKGISVSPANNWRPTSSEKSIKDSNFRAYSKLNLLQFSNRKDPSSLRTQIPSFSLNSSNPSAPPLVVVGSANADIYVEIERLPIEGETISAKSGQTLAGGKGANQAACGGKLAYPTYFVGQVGEDAHGKLIAEALENGGVHLDRLTTVSAAPTGHAVVMLQPDGQNSIIIVGGANTNCWPENLSDEDMEIIRKAGIVLLQREIPDSVNIQVAKAARSANVPVILDAGGMEGDIPRELLSLVDIFSPNESELHRLTGLPTKSFNDVSQAVEKCHKMGVKQVLVKLGEKGSGLFIEGQEPIVQSILPAKRVVDTTGAGDTFTASFAVAVVEGKSMKECMKFAAAAASLCVQVKGAIPSMPDRTSVLNLLQSGV 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22764522 22775424 + BLOR02508 Blo10g00718 65914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00718 461 Hamap Ribokinase [rbsK]. 153 455 IPR011877 GO:0004747|GO:0006014
Blo10g00718 461 PRINTS Ribokinase signature 184 203 IPR002139 GO:0016301
Blo10g00718 461 PRINTS Ribokinase signature 256 269 IPR002139 GO:0016301
Blo10g00718 461 PRINTS Ribokinase signature 370 381 IPR002139 GO:0016301
Blo10g00718 461 PRINTS Ribokinase signature 326 341 IPR002139 GO:0016301
Blo10g00718 461 PRINTS Ribokinase signature 157 178 IPR002139 GO:0016301
Blo10g00718 461 CDD ribokinase 154 449 IPR011877 GO:0004747|GO:0006014
Blo10g00718 461 PANTHER SUGAR KINASE 152 459 - -
Blo10g00718 461 Pfam pfkB family carbohydrate kinase 155 449 IPR011611 -
Blo10g00718 461 SUPERFAMILY Ribokinase-like 154 457 IPR029056 -
Blo10g00718 461 Gene3D - 152 460 IPR029056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00718 K00852 rbsK, RBKS; ribokinase [EC:2.7.1.15] - nnu:104590447 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00718 Blo-Chr10:22764522 Blo11g01037 Blo-Chr11:27948481 2.76E-21 dispersed
Blo18g00456 Blo-Chr18:5095637 Blo10g00718 Blo-Chr10:22764522 3.90E-11 dispersed
Blo10g00718 Blo-Chr10:22764522 Blo12g00231 Blo-Chr12:14883026 7.18E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g16 . . . . Bpe09g00272 . . Bma13g00918 . Cmo04g00703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00718 . . . . . . . . . . . . . . . . . . . . . . Cla07g00986 Cam07g1059 Cec07g1130 Cco07g1107 Clacu07g1031 Cmu07g1024 Cre07g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009964 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00718 Blo_Chr10 FPKM 10.745126 15.413517 18.29372 18.33729 12.556953 13.906351 14.562281 10.75032 11.759686 15.301614