Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00719 ATGGCTGAATATACCCCAAAGAACATCCTCATAACTGGGGCTGCTGGTTTTATTGCATCTCATGTTGCGAATCGGCTTGTCAAACTCTACCCAGACTACAAGATCGTTGTGCTTGACAAGCTTGATTACTGTTCTAATCTGAAGAATCTTCACCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGCAGCGCCGACCTGGTCAATTATCTTCTCATCACTGAGTCGATCGACACAATTATGCATTTTGCTGCACAAACCCACGTTGATAACTCTTTCGGTAACAGTTTCGAGTTCACAAAGAACAACATTTATGGAACTCATGTTCTTCTTGAAGCTTGCAAAGTGACTGGCCAAATCCGAAGGTTCATCCATGTTAGCACCGACGAGGTCTACGGGGAGACAGATGAGGATGCAGTCGTGGGAAATCACGAGGCCTCTCAACTCCTCCCAACAAATCCTTACTCCGCAACAAAAGCCGGAGCCGAAATGCTTGTGATGGCGTATGGCAGGTCGTATGGATTGCCTGTGATCACGACGAGAGGAAATAATGTTTACGGGCCAAATCAATTTCCAGAGAAATTGATTCCAAAATTCATCCTCTTGGCCATGGAAGGAAAGCATCTTCCAATTCATGGAGATGGATCGAACGTTAGGAGTTATCTGTATTGCGAGGATGTTGCAGAGGCTTTTGAAGTCGTTCTTCACAAAGGCGAAGTCGGTCATGTTTACAATGTCGGGACGAAGAAAGAACGGAGAGTTATAGATGTTGCTGAAGATGTTTGCAGACTTTTCTCAATGGATCCAGCCGAGAGTATCAAATTTGTCGAAAACAGACCTTTTAACGATCAGCGATACTTTCTGGACGATCAAAAACTCAAAAACATTGGATGGTCCGAGCGGACTACTTGGGAGGAAGGACTAAAGAAGACTATGGATTGGTATATTAAAAATCCTGATTGGTGGGGTGATGTGTCCGGGGCTTTGCTTCCACACCCGAGAATGCTAATGATGCCAGGCGGATTCGAAAGGCAGCAGGACGGATCAGATGAGAAAAAACCGGCTTCTTCGGCCTCGAGCAATCCTCCTCTGGTGATTCCATCTCCCTCAATGAAGTCTCCCCCTCGAGAGACAGCTCTCAAGTTCTTGATCTACGGCAGAACTGGGTGGCTTGGTGGTCTTCTCGGAAAACTATGCCAAAAACAAGGAATTTCATACGAATACGGAAAAGGGCGTCTGGAGGATCGATTGTCACTCGCATCTGATATTCGGAATATAAAGCCGACTCATGTTTTCAATGCTGCTGGTGTTACTGGAAGACCGAATGTCGATTGGTGTGAAAGTCATAAAACGGAAACAATTCGAACGAATGTTGTCGGAACTCTAAACTTAGCTGATGTTTGCAGGGAAAATGGACTGCTTGTGATGAATTTTGCTACTGGCTGTATATTTGAATATAATCATGCTCATCCGCAAGGATCTGGAATTGGATTTACCGAGGAAGATACGCCCAATTTTACGGGTTCTTTTTACTCGAAAACGAAGGCAATGGTGGAGGAGCTCTTGAAAGAATATGAGAATGTCTGCACTCTAAGAGTTCGTATGCCGATATCATCCGACCTGAACAACCCAAGAAACTTCATCACCAAAATCTCTCGTTACAACAAAGTTGTGAACATCCCAAACAGCATGACCGTCTTGGACGAGCTCCTCCCAATTTCGATCGAAATGGCAAAACGAAACCTGAAAGGCATTTGGAACTTCACTAATCCTGGCGTTGTGAGCCATAACGAGATTCTCGAAATGTACAAGAATTACATCGACTCCGAGTTCAAGTGGGAGAACTTCACGCTCGACGAACAAGCGAAAGTGATCGTCGCTCCGAGAAGCAACAACGAAATGGATGCATCAAAGTTGAAAAAGGAGTTCCCCGAATTATTATCGATAAAAGAGTCGTTGATCAAGTATGTCTTCGAAACGAACAAGAAAATTACTTCTGCATAA 2016 44.35 MAEYTPKNILITGAAGFIASHVANRLVKLYPDYKIVVLDKLDYCSNLKNLHPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMEGKHLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNVGTKKERRVIDVAEDVCRLFSMDPAESIKFVENRPFNDQRYFLDDQKLKNIGWSERTTWEEGLKKTMDWYIKNPDWWGDVSGALLPHPRMLMMPGGFERQQDGSDEKKPASSASSNPPLVIPSPSMKSPPRETALKFLIYGRTGWLGGLLGKLCQKQGISYEYGKGRLEDRLSLASDIRNIKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVVGTLNLADVCRENGLLVMNFATGCIFEYNHAHPQGSGIGFTEEDTPNFTGSFYSKTKAMVEELLKEYENVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKNYIDSEFKWENFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYVFETNKKITSA 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22788782 22790887 + BLOR02509 Blo10g00719 65915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00719 671 Gene3D - 200 322 - -
Blo10g00719 671 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Blo10g00719 671 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Blo10g00719 671 Gene3D - 379 670 - -
Blo10g00719 671 MobiDBLite consensus disorder prediction 356 370 - -
Blo10g00719 671 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Blo10g00719 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 660 IPR036291 -
Blo10g00719 671 Gene3D - 9 313 - -
Blo10g00719 671 Pfam RmlD substrate binding domain 385 556 IPR029903 -
Blo10g00719 671 MobiDBLite consensus disorder prediction 343 378 - -
Blo10g00719 671 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 666 - -
Blo10g00719 671 PANTHER BNAC05G13120D PROTEIN 2 666 - -
Blo10g00719 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00719 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - gmx:100785885 1201.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00719 Blo-Chr10:22788782 Blo19g00009 Blo-Chr19:147702 0 dispersed
Blo17g00268 Blo-Chr17:2784348 Blo10g00719 Blo-Chr10:22788782 1.76E-13 dispersed
Blo19g00278 Blo-Chr19:16628528 Blo10g00719 Blo-Chr10:22788782 1.17E-12 dispersed
Blo10g00719 Blo-Chr10:22788782 Blo07g00977 Blo-Chr7:29262660 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00719 Blo_Chr10 FPKM 58.95401 61.42445 71.108681 72.931686 78.675797 71.172394 72.701492 68.533112 69.023529 68.227539