Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00720 ATGAAGATTCAATGCAATGTCTGCGAGGCAGCGGAGGCGAAAGTTTTATGTTGCGCGGACGAGGCAGCGTTGTGCTGGGCTTGCGACGAGAAGGTTCACGCAGCCAACAAGCTGGCCAGCAAGCACCAGAGGGTTCCTCTTTCTGGCTCTTCTTCTCAAATGCCCAAATGTGACATTTGCCAGGCTGTTCATCTGAGGAAGAACTTAGAATTTATAGGAGATGCCAAAGTAATCTTTGGCTCAGGAAGAGCATTGGCTGGGATGTATACTTATATGACCCTTAATGCAAAGGAGATGAGTGGCTATATCTTCTGTTTAGAGGATCGAGCTTTACTTTGCAGAAAATGCGATGTCGCAATACACACAGCAAATGCTTTTGTATCGGCTCATCAGAGGTTTCTCCTTACTGGTGTGAAAGTAGGTCTTGAACCCACTCTACCTCTTGCTTCCTCTTCTGAGTTGAAGCCTCAAAGTAGAGAGAAAACTTTGGAATCAAAAGCTAGCTCAGGCCCACAAAGAGGCTTCTCAAAGCCGTCAGCTGGTGAAATCAGTCAACAATTGCCTGTCAATCGTCGCGGAATCGGAGACTTCGCACCAACTAAGGCTCCTACACAGAACGGAGGATTTGTATCTGGTGGGCTTCCTCAGTGGCATTTAGACGAGTTTATGGGTATGACGGGATTCAGTCAGAATTACCGGCCCGGCTTCATGGACAATGGTTCATCAAAGGGTAATCGAATGGACCATGGCTCCCAGGCCGGCCAGGACCGAGCTGAAATTTTTCTTTTTAAGGCTGATAGTGGTAAGCTCGGAGATTCCGATTCGCCCGTTCTAAGATCAGGTGAGGACGATATGGACAAAGACGATGAGTGCTTGGGTCAGGTTCCGGACTCTTCTCTGGCCGTTCCTCAGAACCCGTCTCCACCTACAGCTTCAGGCTTGTACTGGCCAAGAAATTACTACAATCCATTGGATACCACAGCCTATGTTCCCGACATATACAGCTCGTCACCGGACCAAAGGCCCCGCCATTATCGACACAGCGGTGTGGCATCAGAACAGTGGAGACAATTGTAG 1077 48.75 MKIQCNVCEAAEAKVLCCADEAALCWACDEKVHAANKLASKHQRVPLSGSSSQMPKCDICQAVHLRKNLEFIGDAKVIFGSGRALAGMYTYMTLNAKEMSGYIFCLEDRALLCRKCDVAIHTANAFVSAHQRFLLTGVKVGLEPTLPLASSSELKPQSREKTLESKASSGPQRGFSKPSAGEISQQLPVNRRGIGDFAPTKAPTQNGGFVSGGLPQWHLDEFMGMTGFSQNYRPGFMDNGSSKGNRMDHGSQAGQDRAEIFLFKADSGKLGDSDSPVLRSGEDDMDKDDECLGQVPDSSLAVPQNPSPPTASGLYWPRNYYNPLDTTAYVPDIYSSSPDQRPRHYRHSGVASEQWRQL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22822165 22824679 + BLOR02510 Blo10g00720 65916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00720 358 MobiDBLite consensus disorder prediction 298 312 - -
Blo10g00720 358 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 62 - -
Blo10g00720 358 PANTHER B-BOX ZINC FINGER PROTEIN 22 263 340 - -
Blo10g00720 358 PANTHER B-BOX ZINC FINGER PROTEIN 22 96 250 - -
Blo10g00720 358 MobiDBLite consensus disorder prediction 163 186 - -
Blo10g00720 358 CDD Bbox1_BBX-like 5 47 - -
Blo10g00720 358 SMART bboxneu5 4 47 IPR000315 GO:0008270
Blo10g00720 358 SMART bboxneu5 97 135 IPR000315 GO:0008270
Blo10g00720 358 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Blo10g00720 358 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 62 - -
Blo10g00720 358 CDD Bbox1_BBX-like 103 135 - -
Blo10g00720 358 PANTHER B-BOX ZINC FINGER PROTEIN 18 263 340 - -
Blo10g00720 358 PANTHER B-BOX ZINC FINGER PROTEIN 18 96 250 - -
Blo10g00720 358 MobiDBLite consensus disorder prediction 270 317 - -
Blo10g00720 358 MobiDBLite consensus disorder prediction 150 211 - -
Blo10g00720 358 MobiDBLite consensus disorder prediction 332 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00720 - - - bhj:120091143 368.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00983 Blo-Chr7:29356810 Blo10g00720 Blo-Chr10:22822165 2.87E-63 dispersed
Blo10g00720 Blo-Chr10:22822165 Blo18g00789 Blo-Chr18:22814417 2.62E-30 dispersed
Blo10g00720 Blo-Chr10:22822165 Blo07g00980 Blo-Chr7:29282753 1.34E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g32 . . . . Bpe09g00270 . Bma10g00461 Bma13g00920 Cmo16g00458 Cmo04g00707 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1023 . . . . . . Blo10g00720 . . . . . . . . . Cma04g00659 Cma16g00426 . . Cpe14g00359 Cpe01g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00720 Blo_Chr10 FPKM 9.127172 10.59029 3.329032 3.544579 12.304479 13.395584 12.701143 1.022371 0.974778 1.172758