Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00726 ATGACTTCAGGAACGAGGCTACCAACATGGAGGGAGAGGGAAAACAACAAGAGAAGAGAGAGAAGGAGGAGAGCGATTGCTGCTAAGATCTTCACTGGTCTAAGAATGTACGGGAACTATAAGCTCCCCAAGCACTGCGATAACAATGAGGTCCTGAAAGCTCTCTGCAACGAGGCCGGTTGGACAGTTGAATCTGACGGCACCACCTACCGTAAGGTTACCTCGAAGGAAAATCTTCTCGTGTGTTTTATGCTCGTAAAAGTTGTGAGTTTGGTTGCTGAGTTTCACGAAGGGAGCATTAGTCTCGTGAAAAAGATCGCCTTTTTCGTACAATTTGGGTGCGGGAAGAAGCCAAATCTTGGGACTGAGGGATGTAAGCCTGTTGAAAGATTAGTTGTTGGTGGACTGGCAGCTACTGCGTGCTCATCTCAGTATTGCAGTCCTTGTGCTTCCTATAATCCAAGCCCCGGTTCTTCCTCTTTCCCCAGTCCAATCTCATCTTCTTATGCTGTTCCCAATCCAACAACGGATGGAAATTCCCTCATCCCATGGCTTAAAAATCTTTCATCTGCCCCATCGCATGCATCCTCTTCTAAGCTCCCTCACCACTATATCCATGGAGGCTCTATCAGTGCTCCAGTTACCCCACCGTTGAGCTCCCCAACTGCCAGAACACCCCGAATTAAAGCCAACTGGGAAGAACAGGTCACCCAACCTGGTTGGAGTGCTCAACATTACTCGATCCTACCATCCTCTACTCCACCGAGCCCCGGCCGACAAATATTTCCGGATCCAGAATGGTTTTCCTGGCTTAGTAGAATTCCTCATAGTGGACCTAATTCTCCAACATTCAGCCTTGTCTCTACTAACCCTTTTGGGTTTAAGGAAGAGGCTTTGGCTTGCGGTGGATCACGTATGTGGACTCCCGGGCAAAGCAGAACATGCTCTCCTGCCCTTGCAGCGGACTCTGATCCCACTGCAGACATTCCAATGGCTGAAGTTATTTCAGATGAGTTTGCATTTGGAAGCAATGCTGCTCGGATAGTAGTCAAGCCTTGGGAAGGAGAGAGGATCCACGAAGATAGTGGATCAGATGATCTCGAGCTGACTCTTGGGAGTTCAAGGACAAGAATCAAAGTTCCATTTCACCTCCATAACAGGCGACAAGCTGCTTATGTTCAAGTAATGGGTGCCTTTTTGGCCCTTCCATTGGATTTTCTCTCCAGAAACTCAACTATTTCTACAATGACTGCCATCAATTTATGGGTTGGCTGCCTTTTGAGTGTCGAATGTTTTTTTAGCTTTCTTGAAGCCTCTTAA 1320 47.5 MTSGTRLPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVESDGTTYRKVTSKENLLVCFMLVKVVSLVAEFHEGSISLVKKIAFFVQFGCGKKPNLGTEGCKPVERLVVGGLAATACSSQYCSPCASYNPSPGSSSFPSPISSSYAVPNPTTDGNSLIPWLKNLSSAPSHASSSKLPHHYIHGGSISAPVTPPLSSPTARTPRIKANWEEQVTQPGWSAQHYSILPSSTPPSPGRQIFPDPEWFSWLSRIPHSGPNSPTFSLVSTNPFGFKEEALACGGSRMWTPGQSRTCSPALAADSDPTADIPMAEVISDEFAFGSNAARIVVKPWEGERIHEDSGSDDLELTLGSSRTRIKVPFHLHNRRQAAYVQVMGAFLALPLDFLSRNSTISTMTAINLWVGCLLSVECFFSFLEAS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22920767 22923616 - BLOR02516 Blo10g00726 65922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00726 439 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 72 IPR033264 GO:0003700|GO:0006351|GO:0009742
Blo10g00726 439 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 124 378 - -
Blo10g00726 439 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 72 - -
Blo10g00726 439 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 189 IPR008540 -
Blo10g00726 439 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 124 378 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00726 - - - tcc:18594295 488.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00870 Blo-Chr1:17030855 Blo10g00726 Blo-Chr10:22920767 8.42E-109 dispersed
Blo06g00124 Blo-Chr6:4857397 Blo10g00726 Blo-Chr10:22920767 2.21E-34 dispersed
Blo07g00988 Blo-Chr7:29406779 Blo10g00726 Blo-Chr10:22920767 3.74E-130 dispersed
Blo07g00989 Blo-Chr7:29408788 Blo10g00726 Blo-Chr10:22920767 8.43E-28 dispersed
Blo10g00726 Blo-Chr10:22920767 Blo11g00263 Blo-Chr11:2124865 1.08E-114 dispersed
Blo10g00723 Blo-Chr10:22876017 Blo10g00726 Blo-Chr10:22920767 7.72E-31 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g01552 . 122 407 BZR Transcription Factor Family AT1G75080 66.2 4.0e-90 328.6
Blo06g00124 . 28 307 BZR Transcription Factor Family AT1G75080 55.1 6.2e-75 278.1
Blo01g01552 . 122 405 BZR Transcription Factor Family AT1G19350 64.9 1.1e-90 330.5
Blo06g00124 . 28 304 BZR Transcription Factor Family AT1G19350 57.8 5.3e-74 275.0
Blo06g00124 . 2 301 BZR Transcription Factor Family AT3G50750 56.5 3.3e-74 275.4
Blo01g01552 . 90 404 BZR Transcription Factor Family AT3G50750 50.5 2.1e-60 229.6
Blo11g00263 BCT 112 363 BZR Transcription Factor Family AT4G18890 55.6 5.3e-56 214.5
Blo07g00988 . 76 286 BZR Transcription Factor Family AT4G18890 50.5 7.9e-44 174.1
Blo10g00726 . 173 377 BZR Transcription Factor Family AT4G18890 52.6 1.9e-42 169.5
Blo11g00263 BCT 1 363 BZR Transcription Factor Family AT1G78700 62.1 3.4e-102 368.6
Blo01g00870 BCT 1 355 BZR Transcription Factor Family AT1G78700 55.7 3.9e-98 355.1
Blo10g00726 . 1 377 BZR Transcription Factor Family AT1G78700 60.4 6.6e-98 354.4
Blo07g00988 . 28 286 BZR Transcription Factor Family AT1G78700 60.8 2.3e-66 249.6
Blo06g00124 . 28 201 BZR Transcription Factor Family AT4G36780 74.6 1.7e-59 226.5
Blo01g01552 . 122 301 BZR Transcription Factor Family AT4G36780 57.0 5.7e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12846 PF05687 BES1_N 7.60E-57 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00726 Blo_Chr10 FPKM 18.99567 17.447662 1.882682 1.500407 75.45768 62.413574 66.824738 2.368772 1.047904 1.092284