Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00730 ATGAGGGAAGAAGAAGTAGAGAAGCTTCGCGGGGTTGTGAGGGACTGCGTGAGCAAGCACCTCTATTCGTCCGCCATTTTCTTTGCTGACAAGGTTGCTGCTTTCACTGAGGACCCAGCTGATATCTACATGCAGGCGCAGGCTCTCTTTCTCGGCCGCCATTTTCGCCGTGCCTTTCACCTCCTTAACGCTTCCAAGATTGTCCTTAGGGACCTCCGGTTTCGATACCTAGCAGCTAAATGCCTCGAGGAACTGAAGGAGTGGGACCAGTGCTTATTGATGCTTGGTGATGCCAAAGTGGATGACCATGGAAACGTGTACGACATGAAGGACAGTAATGGCATGTACTTGGATAAGGATGGAGAAGATCGCGAGATTAATGCAACGATATGCTTTTTGAGAGGTAAGGCTTTTGAAGCTTTGGAAAACCGTGCTCAAGCTCGGCTTTGGTACAAAGCTGCTATCAAGGCCGATCCTTTATGTTATGAGGCTTTGGAATGTCTTATTGAAAATCACATGCTCACATCAGATGAAGAAACAAGTTTACTTTTGTCACTGCAGTTTGGTCCAGAGGACAACTGGCTCTCAACATTTTATTCATGCTTATTAAAGAAGTATGATAAAGAAAATGTTGTCGAGGCAAAATTCAAAGAATTGGAAAAAGAAAGCTGTAATAGCAAGCGTCCCGATCCATCATTCATGCGTACATTGAAAACTAACACAGATCTTTTAGCTTGCAAAGCCGAGTACTACCATCAACGTGGTGAATATCAGAAATGCTTTGAACTAACTTCTGTGTTGCTTGAAAAGGATCCTTTCCATTTAAAATGTACTGTGGTGCATTTAGCTGCCGCAATGGAATTGGGGCATTCTAATGAGCTTTATCTTATGGCCTGTAATTTAGTGAAGGATTATCCTCAAAAGGCTTTCTCGTGGTTTGCTGTTGGTTGTTACTATTACTGTATCAAGAAATATGATCAATCACATCGTTATTTCTGCAAAGCTACGACTTTAGATGGAACATTTGCACCGGCTTGGATAGGTTATGGCAATGCTTATTCTGCTCAAGAAGAGGGGGATCAAGCAATGTCAGCTTATCGCACTGCTGCTCGTTTATTTCCTGGGTGTCATCTACCAACTTTATACATTGGAATGGAATACATGCGAACTCACAGTTTTAAGCTTGCTGAGCAGGCAATGACAATTTGTCCATCAGATCCCCTTGTTTACAATGAGCTTGGAGTTGTTGCTTATCATATGAAGGAGTATAGCAAAGCCGTTCAGTGGTTTGAGAAAACTTTGGCTTGCATTTCCTCCCCTATCGGTGAAATGTGGGAGCCAACTGTTGTAAATCTTGCTCATTCGTACCGAAAATCGAAATTATATCACGAAGCAATTTCATACTATGAAAAAGCACTTGCACTATCAACAAAAAGCTTGAGCATTTATGCAGGTCTTGCATACACCTACCATTTGCAGGATAATTTCACGGCAGCAATTACGTATTATCACAAGGCTTTATGGCTGCAACCAGATGATCAGTTTTGCACTGAGATGTTAAATTTGGCACTCGTTGACGAATGCAAACTCGGAATCGACTCCAAAATGGAATTTCAGCTAAATGATGTTTTCTTATAA 1638 42.0 MREEEVEKLRGVVRDCVSKHLYSSAIFFADKVAAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLMLGDAKVDDHGNVYDMKDSNGMYLDKDGEDREINATICFLRGKAFEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTSDEETSLLLSLQFGPEDNWLSTFYSCLLKKYDKENVVEAKFKELEKESCNSKRPDPSFMRTLKTNTDLLACKAEYYHQRGEYQKCFELTSVLLEKDPFHLKCTVVHLAAAMELGHSNELYLMACNLVKDYPQKAFSWFAVGCYYYCIKKYDQSHRYFCKATTLDGTFAPAWIGYGNAYSAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMEYMRTHSFKLAEQAMTICPSDPLVYNELGVVAYHMKEYSKAVQWFEKTLACISSPIGEMWEPTVVNLAHSYRKSKLYHEAISYYEKALALSTKSLSIYAGLAYTYHLQDNFTAAITYYHKALWLQPDDQFCTEMLNLALVDECKLGIDSKMEFQLNDVFL 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22973311 22980921 + BLOR02520 Blo10g00730 65926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00730 545 SUPERFAMILY TPR-like 243 514 IPR011990 GO:0005515
Blo10g00730 545 ProSiteProfiles TPR repeat profile. 446 479 IPR019734 GO:0005515
Blo10g00730 545 PANTHER CELL DIVISION CYCLE 16,23,27 6 529 - -
Blo10g00730 545 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Blo10g00730 545 Gene3D Tetratricopeptide repeat domain 5 526 IPR011990 GO:0005515
Blo10g00730 545 Pfam Tetratricopeptide repeat 481 513 IPR019734 GO:0005515
Blo10g00730 545 Pfam Tetratricopeptide repeat 450 476 IPR019734 GO:0005515
Blo10g00730 545 Pfam Tetratricopeptide repeat 128 159 IPR019734 GO:0005515
Blo10g00730 545 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Blo10g00730 545 ProSiteProfiles TPR repeat profile. 343 376 IPR019734 GO:0005515
Blo10g00730 545 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 6 529 - -
Blo10g00730 545 SUPERFAMILY TPR-like 38 176 IPR011990 GO:0005515
Blo10g00730 545 SMART tpr_5 343 376 IPR019734 GO:0005515
Blo10g00730 545 SMART tpr_5 241 274 IPR019734 GO:0005515
Blo10g00730 545 SMART tpr_5 128 161 IPR019734 GO:0005515
Blo10g00730 545 SMART tpr_5 407 440 IPR019734 GO:0005515
Blo10g00730 545 SMART tpr_5 446 479 IPR019734 GO:0005515
Blo10g00730 545 SMART tpr_5 309 342 IPR019734 GO:0005515
Blo10g00730 545 SMART tpr_5 480 513 IPR019734 GO:0005515
Blo10g00730 545 Pfam Tetratricopeptide repeat 410 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00730 K03353 APC6, CDC16; anaphase-promoting complex subunit 6 - zju:107432569 976.467
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00730 Blo-Chr10:22973311 Blo18g00524 Blo-Chr18:6771479 4.56E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g99 . . . . . . . Bma13g00927 Cmo16g00470 Cmo04g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00730 . . . . . . . . . Cma04g00672 Cma16g00435 . . Cpe14g00368 Cpe01g00606 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006118 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00730 Blo_Chr10 FPKM 4.163043 4.440064 0.294867 0.247373 0.85715 0.718637 0.829059 0.129886 0.0 0.0