Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00732 ATGTCTCTTCGCAAAGCTTTGTTGTCTCGGATTTCTTCTTCCAAGTCTTTTAAGGAATCCAAAGGTGTGGAAGAGGTTGCGCCGGTCGATCCGGAGATCGGGAAAGATTTGTCAGCCGAGTCTTCTGGCGTAGTTTGTGACTCGGCCTGGTCTTCCATGCTTCCGGAGATCCTCGGCGACATTATAAGGCGCGTTGAGGTTAGCGACGAACTGTGGCCTCGCAGACAGAACGTTGTTGCTTGTGCTTGTGTGTGCAAGCGCTGGAGGGATCTTGCGAAGGAGATCGTCGCGGCTCCTTCGCTCAGTGGAAAAATCACTTTCCCTTCTTGTCTTAAGCAGCCTGGGCCGCGTGACCTTCCACATCAATGTATTATACAACGAAACAAGAAAAATTCAACTTTTAAACTCTATCTCGCTCTTAGTCAATCATTCACAGATAAGGGAAAGTTTCTCTTAGCTGCCCGGAGAAATAGGCATGGAGCTCACACAGAGTATATTATTTCTCTTGATGCTGAAGACATATCTCAAGGAAGCAATGCTTATGTAGGAAAATTAAGCTCGGACTTTATTGGCAACAATTTCACAATTTATGATAGCCAACCACCACACAGTGGTGCAAAGCCATCAAGTAGTAAAGCCAGCCGTCGTTTTGCAAGCAAGCAAATAAGTCCCCAAGTTCCTGCAGGCAACTTTGAGGTTGGGCAAGTCTCTTACAAATTCAACCTTTTGAAATCGAGAGGTCCAAGAAGGATGATGTGCTTGTTGAAATACCCTTGGTTGGGAGAAACTGCCCTCCATAAACCATTGGAGCCCTCCAAGACACAGAAATCAGATCCTTCTTCTCCAGGTTTCACAATCTTGAAAAACAAAGCTCCAAGATGGCATCAGCATCTGCAATGCTGGTGTTTGAATTTCCATGGGCGAGTGACAGTGGCTTCAGTGAAGAACTTTCAACTCATTGCCACCACTGACCAGAGCCAACCCGGCGGAAAAGGAGATGAAGAAACAGTTCTCCTCCAGTTTGGGAAAGTGAATGACAACTTGTTCACCATGGATTACAGGCAGCCGTTGTCGGCGTTTCAAGCTTTCGCCATTTGCCTCACCAGCTTCGGCACAAAACTCGCCTGCGAGTAG 1134 46.91 MSLRKALLSRISSSKSFKESKGVEEVAPVDPEIGKDLSAESSGVVCDSAWSSMLPEILGDIIRRVEVSDELWPRRQNVVACACVCKRWRDLAKEIVAAPSLSGKITFPSCLKQPGPRDLPHQCIIQRNKKNSTFKLYLALSQSFTDKGKFLLAARRNRHGAHTEYIISLDAEDISQGSNAYVGKLSSDFIGNNFTIYDSQPPHSGAKPSSSKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMMCLLKYPWLGETALHKPLEPSKTQKSDPSSPGFTILKNKAPRWHQHLQCWCLNFHGRVTVASVKNFQLIATTDQSQPGGKGDEETVLLQFGKVNDNLFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 22992816 22995804 - BLOR02522 Blo10g00732 65928
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00732 377 Gene3D Tubby Protein; Chain A 106 377 IPR025659 -
Blo10g00732 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Blo10g00732 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Blo10g00732 377 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Blo10g00732 377 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Blo10g00732 377 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Blo10g00732 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Blo10g00732 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Blo10g00732 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Blo10g00732 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Blo10g00732 377 SUPERFAMILY Tubby C-terminal domain-like 99 377 IPR025659 -
Blo10g00732 377 MobiDBLite consensus disorder prediction 200 221 - -
Blo10g00732 377 Pfam F-box domain 50 96 IPR001810 GO:0005515
Blo10g00732 377 Pfam Tub family 111 372 IPR000007 -
Blo10g00732 377 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 377 - -
Blo10g00732 377 PANTHER TUBBY-RELATED 1 377 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00732 Blo-Chr10:22992816 Blo12g00786 Blo-Chr12:26257209 7.64E-120 dispersed
Blo10g00732 Blo-Chr10:22992816 Blo02g00865 Blo-Chr2:33067374 2.06E-123 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12847 PF01167 Tub 3.40E-99 CL0395 Blo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00732 K19600 - mnt:21387850 541.576