Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00734 ATGGCGGACGCAAAAGCTATTTTATCTTTTGCAGTTTCCATTGCTGCTTCTGCGGTGCTTGTTCGAAGCATCATCAATGATGTAGTACCAGCAGAAACCAAAACGATTTTTTTTTCAGGCATCAATTACGTCTATCGCCAATTCTCATCCCAGCTGACCCTCGTCATAGACGAATTTCAAGGCCTCTCCGTTAACCAGGTCTTCGAAGCTGCAAATGACTACTTGGGCAGGATTGCTTCTCCGTCTGCTGAAAGACTGAAAGTAAGCAAAGCTGAGAATGACAAGACCTTGATAATCAACATTGATCGGGATGAAGAAGTGGTCGACGTCTATGACAGCATCAAGATTACTTGGACGCTGATTTCCACGAAGATAGAAAAATCTGGCGAAAGCCATCCAGGTGACATAAATGCTGCGCTGAAATCTGAGGTTAGAGCGTATGAGTTGACATTTCACAAGAAACACAGAGAGAAAGTTTTGAATTCTTACATTCCGTTTATTATGGAGAGAGCGAAGGCCATTAAGGAGGAGCAGAAGACGATTCAGCTCCACACTGTTAATTATAGTTGTTGGGATGAGAATACTGTAACTCTAAATCATCCCATGACCTTCGAGACGCTAGCAATCGATAACGAGCTTAAGAAATCGATAATGGACGATTTGGAAAACTTTGCAAAGGGAAAAGATTTCTACAGAAAAATCGGAAGAGCTTGGAAACGAGGATACCTGTTGTACGGACCTCCCGGAACGGGAAAGTCGAGCTTGATTGCAGCCATGGCTAATCACCTGAACTACGACGTTTACGATTTGGATTTAACAGACATTGTAAGAAACTCTGACTTTAGAGGGTTGTTGCTAGGTATGTCTAATCGTTCGATTCTCGTCATTGAGGACATCGATTGCTCTATCAAACTGAAGAATCGAGAATCGGAAGAGAAAGAAGAAGATGACAACTCCTCTCAAAATAAGGTCACACTCTCCGGTCTTCTCAACTTCATCGACGGTCTATGGTCGTGCTGCGGGGAAGAACGAGTGATCATCTTTACGACAAATCACAAGGAGAAGCTCGATCCAGCACTATTACGGCCGGGACGAATGGATATGCATATCAATCTGTCATACTGCACCATTTCTGCGTTCAAGCAATTAGTTAAGAATTACCATGGCGTCCATCAGCACGAGCTTTTTGAACAAATAGAAAAACTTATACAAGAGATTGAGGTCACTCCTGCAGAAGTTGCGGGAGAGCTAATCAAGAACAGCAATCCAGAAAAATCACTTCAAGGCCTCGTTGAATTCTTGCAGAACAAGATGAAATCTCAAAATGAGGCTAAAACAGAGGAGAATATTGAAGATCGAGAAACTCAGCGCCTCTTGAGTGAACCAGCCCCAGGAATCAGTGCCTCGCCTTCAGAAGATAATATGCGATACTTTAATGTGATGATACTCGGCCCAACCCAGTCCCCTTACGAAGGTGGGGTTTTCAAGTTGGAACTATTTTTGCCTGAAGAATATCCTATGGCTGCTCCCAAGGTTCGATTTCTCACCAAGATATATCATCCTAACATTGATAAGCTTGGGAGGATATGCCTTGATATTCTGAAAGACAAATGGAGTCCCGCTCTCCAAATAAGAACTGTGCTTTTAAGTATTCAAGCTCTGCTGAGTGCGCCAAACCCTGATGATCCACTTTCTGAGAACATTGCGAAGCATTGGAAAACAAATGAAGCTGAAGCCGTTGAAACAGCCAAGGAATGGACCCGTTTGTATGCAAGTGGTGCTTGA 1785 43.25 MADAKAILSFAVSIAASAVLVRSIINDVVPAETKTIFFSGINYVYRQFSSQLTLVIDEFQGLSVNQVFEAANDYLGRIASPSAERLKVSKAENDKTLIINIDRDEEVVDVYDSIKITWTLISTKIEKSGESHPGDINAALKSEVRAYELTFHKKHREKVLNSYIPFIMERAKAIKEEQKTIQLHTVNYSCWDENTVTLNHPMTFETLAIDNELKKSIMDDLENFAKGKDFYRKIGRAWKRGYLLYGPPGTGKSSLIAAMANHLNYDVYDLDLTDIVRNSDFRGLLLGMSNRSILVIEDIDCSIKLKNRESEEKEEDDNSSQNKVTLSGLLNFIDGLWSCCGEERVIIFTTNHKEKLDPALLRPGRMDMHINLSYCTISAFKQLVKNYHGVHQHELFEQIEKLIQEIEVTPAEVAGELIKNSNPEKSLQGLVEFLQNKMKSQNEAKTEENIEDRETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23031825 23039260 - BLOR02524 Blo10g00734 65930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00734 594 Coils Coil 431 451 - -
Blo10g00734 594 Pfam Domain associated at C-terminal with AAA 30 121 IPR025753 -
Blo10g00734 594 CDD UBCc 453 587 IPR000608 -
Blo10g00734 594 MobiDBLite consensus disorder prediction 441 471 - -
Blo10g00734 594 Gene3D - 371 440 - -
Blo10g00734 594 PANTHER BCS1 AAA-TYPE ATPASE 4 447 - -
Blo10g00734 594 Pfam ATPase family associated with various cellular activities (AAA) 243 373 IPR003959 GO:0005524|GO:0016887
Blo10g00734 594 Gene3D Ubiquitin Conjugating Enzyme 441 593 IPR016135 -
Blo10g00734 594 CDD AAA 239 374 - -
Blo10g00734 594 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 447 - -
Blo10g00734 594 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 519 534 IPR023313 -
Blo10g00734 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 419 IPR027417 -
Blo10g00734 594 SMART ubc_7 449 592 - -
Blo10g00734 594 SUPERFAMILY UBC-like 453 592 IPR016135 -
Blo10g00734 594 SMART AAA_5 238 376 IPR003593 -
Blo10g00734 594 ProSitePatterns AAA-protein family signature. 344 362 IPR003960 GO:0005524|GO:0016887
Blo10g00734 594 Pfam Ubiquitin-conjugating enzyme 453 586 IPR000608 -
Blo10g00734 594 MobiDBLite consensus disorder prediction 441 458 - -
Blo10g00734 594 Gene3D - 190 370 IPR027417 -
Blo10g00734 594 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 446 592 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00734 K08900 BCS1; mitochondrial chaperone BCS1 - jre:109012300 571.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00965 Blo10g00734 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01771 Blo-Chr1:57437038 Blo10g00734 Blo-Chr10:23031825 4.56E-30 dispersed
Blo06g01162 Blo-Chr6:35027319 Blo10g00734 Blo-Chr10:23031825 1.49E-37 dispersed
Blo07g00967 Blo-Chr7:29086047 Blo10g00734 Blo-Chr10:23031825 2.52E-137 dispersed
Blo10g00734 Blo-Chr10:23031825 Blo18g00374 Blo-Chr18:3930281 1.09E-122 dispersed
Blo01g00257 Blo-Chr1:3288649 Blo10g00734 Blo-Chr10:23031825 2.49E-109 transposed
Blo06g00140 Blo-Chr6:5591355 Blo10g00734 Blo-Chr10:23031825 1.65E-162 transposed
Blo10g00734 Blo-Chr10:23031825 Blo07g00965 Blo-Chr7:29043691 9.84E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g121 . . . . . . Bma10g00474 . Cmo16g00477 Cmo04g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00965 Blo10g00734 . Bda12g00818 . Bpe03g00854 . . . . . Cma04g00573 Cma16g00442 Car04g00543 . Cpe14g00372 Cpe01g00518 . . . . . . . . . . . . . . Lsi05g00796 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006747 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00734 Blo_Chr10 FPKM 3.822581 3.977891 4.366055 3.932246 2.487444 2.52831 1.865602 4.240923 2.795803 3.073153