Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00759 ATGAGTTTGTACTTGGCAAGTCTGGAGTACTGGGCGTTCGAGATTCTCGTGCTCTTAGCCGGATTGATGCCTAACCCAGAAACAACTACTTCATTAATTGCAATGTGTGTAAACACAGAATTCATTGCCTATATGTGCACCTTAGGCCTCAGTGCTGCTGCAAGCACGAGAGTGTCGAATGAGTTGGGAGCGGGCAATCTAAAGCAAGCAAAGGCGGCCATGGCAGTGACTCTCAAGCTCTCCCTCATCTTTGCATTTGCCACTGATGTAGCACTTGGGTTAGGCCATAACATCTGGGCCTCCCTTTTCAGTAGCAGCCATGTGATAATTGAAGCATTTGCTTCTATGACGCCCTTGCTCGTTGTTTCGATAATATTCGATTCGATTCAAGGCATCTTTTCAGGGGCTGCCAGAGGTTGCGGGTGGCAACATTTTGCAATGTACATAAACTTAGTGACCTTTTATGTAATCGGCATGACAATTGCGGCTGTGCTTGGGTTTAAGTTTAAACTACACGCCAAGGGTTTGTGGGTCGGCTTAATTTCCGGCCTCTTTTGTCAGACTAGCTCGCTCGCGATTGTTATGTGGCGCGGGAAATGGAAGAAGATCGATTTGTATGAGCATGACACCAACGAAGCTCAGAAACCACTTGTTGTGTGA 660 46.82 MSLYLASLEYWAFEILVLLAGLMPNPETTTSLIAMCVNTEFIAYMCTLGLSAAASTRVSNELGAGNLKQAKAAMAVTLKLSLIFAFATDVALGLGHNIWASLFSSSHVIIEAFASMTPLLVVSIIFDSIQGIFSGAARGCGWQHFAMYINLVTFYVIGMTIAAVLGFKFKLHAKGLWVGLISGLFCQTSSLAIVMWRGKWKKIDLYEHDTNEAQKPLVV 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23782455 23783906 + BLOR02549 Blo10g00759 65955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00759 219 Pfam MatE 8 162 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo10g00759 219 PANTHER MULTIDRUG RESISTANCE PROTEIN 7 203 - -
Blo10g00759 219 PANTHER PROTEIN DETOXIFICATION 7 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00759 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - twl:119985384 285.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00759 Blo-Chr10:23782455 Blo11g00756 Blo-Chr11:10289536 1.55E-50 dispersed
Blo10g00756 Blo-Chr10:23756077 Blo10g00759 Blo-Chr10:23782455 3.81E-135 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g197 . . . . . . Bma10g00496 Bma13g00946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00759 . . . Bpe03g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00759 Blo_Chr10 FPKM 1.215106 2.081369 0.170235 0.209627 12.543983 12.604749 13.825506 1.463885 1.577137 1.725564