Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00761 ATGGCTGCCTCTATCGCCGGAACACTATGGTGTGTCCGACGAACTGTTCTACCATCCCTTCTGCATCATCCTCTTCGCGTAAACGATAATAAGCTCTCCTGTGGCTGTCATAAGACCCATTCTTCTCTTCCTCTCTTAGCTCCTCTAATTTCTTCAGCGTCAAGAATATGCCACTTATCTCAAGCTGTGAAGGGAGATATTGATATCCCACTAAAAGGTGTGGGAGACAAAAGTGTTCTTGAAGAAGTGAAGCATGTTCTTGAAATGGCCAGACGAGCACTTTCAAGAAGAGAGGTCCTCCATACAAATTTTCTTACTCCACCTGTCTCGAAAGAGTCTATGATAGCTATAGGAAAACTAGCCGATACAAAAGCGATTGTTCAGGGAGGATATCCGCAGGCTGAACGTTGTCGAATTTCTGTTGGACATCCAGATGACTTGACAAGTGATCCAGATATAATTGTAGCATTGAGTATTACAGGCAACTTTGGATTTCAATCATGCTCCCATGGGGACTTTCTTGGATCAATTCTTGGTACAGGAATTACTAGAGAGAAAGTTGGTGATATCCTCTTGCAGGGAAAGAGTGCGCAAGTCCTAGTTGTTCCTGAACTTGTTGACTTCCTTACATCATCATTGGACAAGGTTGGGAATGTTCCTGTCTATTGTACAAGAATACCATTGAATTCTCTTGATTATGAACCACCACAAACAAAGTCATTTAAAACCGTAGAATCATCCCTAAGGGTGGATGCTCTAGCCAGTGCAGGATTTAAGATTTCACGATCAAAACTAGTGGAGATGATTAGCAATGGCGACGTTCGAGTCAACTGGACAACCGTGACTAAAAATGGAGCGGCTCTCAAAGCGGGCGATATGGTTTCTGTCAGTGGCAAAGGAAGACTAAAGATTGGAGAAATAAACTCTACGAAGAAAGGGAAATTCGCTGTCGAGCTTATTCGATACATTTAA 972 42.7 MAASIAGTLWCVRRTVLPSLLHHPLRVNDNKLSCGCHKTHSSLPLLAPLISSASRICHLSQAVKGDIDIPLKGVGDKSVLEEVKHVLEMARRALSRREVLHTNFLTPPVSKESMIAIGKLADTKAIVQGGYPQAERCRISVGHPDDLTSDPDIIVALSITGNFGFQSCSHGDFLGSILGTGITREKVGDILLQGKSAQVLVVPELVDFLTSSLDKVGNVPVYCTRIPLNSLDYEPPQTKSFKTVESSLRVDALASAGFKISRSKLVEMISNGDVRVNWTTVTKNGAALKAGDMVSVSGKGRLKIGEINSTKKGKFAVELIRYI 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23792715 23797817 - BLOR02551 Blo10g00761 65957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00761 323 SUPERFAMILY Alpha-L RNA-binding motif 128 311 - -
Blo10g00761 323 TIGRFAM PS_II_S4: photosystem II S4 domain protein 81 321 IPR017506 -
Blo10g00761 323 Gene3D - 150 232 IPR012677 -
Blo10g00761 323 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 56 323 - -
Blo10g00761 323 Pfam Putative RNA-binding domain in YlmH 157 229 IPR040591 -
Blo10g00761 323 CDD S4 249 303 - -
Blo10g00761 323 ProSiteProfiles S4 RNA-binding domain profile. 248 308 - -
Blo10g00761 323 SMART s4_6 248 308 IPR002942 GO:0003723
Blo10g00761 323 Pfam S4 domain 252 294 IPR002942 GO:0003723
Blo10g00761 323 Gene3D - 242 299 IPR036986 GO:0003723
Blo10g00761 323 Gene3D - 78 143 - -
Blo10g00761 323 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 56 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00761 - - - fve:101301096 446.047
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g212 . . . . Bpe09g00236 . . Bma13g00952 . Cmo04g00586 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1060 . . . . . . Blo10g00761 . Bda12g00838 . . . . . . . Cma04g00552 . Car04g00521 . . Cpe01g00494 . . . . . . . Cla05g01006 Cam05g1095 Cec05g1105 Cco05g1098 Clacu05g1091 Cmu05g1042 Cre05g1115 . . Chy06g01159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010642 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00761 Blo_Chr10 FPKM 3.239543 3.095388 4.047584 4.313978 3.902073 4.301371 4.138009 13.988806 13.143469 14.72636