Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00789 ATGGCCAGAGGCCATTTCTTCCCTTCTTCGCTGGAGGCGAAGCCGAAGAGAGAGCGAGGGCAAACGAGGGAGAGGGAGACGGCGACGACGAGCAGGAGGACGACATCCGGCGAGCAGGCGACGTTGTCTGGCGGCTGCTGCAACGACGGCATGCGAACGAGCAGCGTGGGTCGACGATTTAGGGCTCAAGATCGGAGCTCCTACCGTGGCGTTTTTCGGCGACGAATTGGAGGTATGTTGGTCGGGTTTTCTTACCCTTCATGTTCTGATAGTCGGGTGTTGGATAGGGTGATTGGAATTGAAAATTTGAGAGGGATGCAAGGGGGTTGGTGTTTTGGCAGAGGAACGCTTGTGGAGTATCGGAAGAGAAGATGGGTAACTATTAAGTGCCAACAGCGAGAAAGAATTGAGGTAAGGAAATGGGTTGTCTTGGCCTTATGCCCTACACCCAAGTACTATTCCATGTATGGACACGTCGAAAGACTTGCTGAGGAAATAAAGAAAGGGGCAGCATCTGTTGAAGGCGTGGAAACCAAATTATGGCAGGTTCCAGAGACATTGCCCCAGGAGGTTCTTATCAAGATGAGCGCACCACCCAAGAGTGATACACCGATTATCACTCCTAATGAACTTGCTGAAGCTGATGGGTTTATTTTCGGATTTCCAACGAGATTTGGAATGATGGCTGCTCAATTCAAAGCCTTTCTGGATGCAACCGGAGGCCTGTGGAGAACACAACAGCTGGCAGGCAAACCGGCCGGAATCTTTTACAGCACTGGGTCCCAGGGCGGTGGACAGGAAACCACTCCATTGACTGCCATAACTCAGCTGGTTCACCACGGAATGATATTTGTTCCGATCGGCTACACATTTGGAGCTGGAATGTTCGAAATGGAATCAGTCAAAGGTGGAAGCCCCTACGGTGCGGGCACCTACGCAGGCGATGGGTCTAGACAGCCATCGGAGCTGGAGTTGGAGCAAGCATTTCACCAAGGCAAGTACATTGCCACTATCACCAAGAAGCTCAAGGGAGCAGCCTAA 1041 51.87 MARGHFFPSSLEAKPKRERGQTRERETATTSRRTTSGEQATLSGGCCNDGMRTSSVGRRFRAQDRSSYRGVFRRRIGGMLVGFSYPSCSDSRVLDRVIGIENLRGMQGGWCFGRGTLVEYRKRRWVTIKCQQRERIEVRKWVVLALCPTPKYYSMYGHVERLAEEIKKGAASVEGVETKLWQVPETLPQEVLIKMSAPPKSDTPIITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMFEMESVKGGSPYGAGTYAGDGSRQPSELELEQAFHQGKYIATITKKLKGAA 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24669237 24679011 + BLOR02579 Blo10g00789 65985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00789 346 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 152 342 IPR010089 GO:0003955|GO:0010181
Blo10g00789 346 MobiDBLite consensus disorder prediction 10 31 - -
Blo10g00789 346 Pfam NADPH-dependent FMN reductase 160 287 IPR005025 GO:0016491
Blo10g00789 346 Gene3D - 151 344 IPR029039 -
Blo10g00789 346 SUPERFAMILY Flavoproteins 152 343 IPR029039 -
Blo10g00789 346 ProSiteProfiles Flavodoxin-like domain profile. 148 335 IPR008254 GO:0010181
Blo10g00789 346 MobiDBLite consensus disorder prediction 32 50 - -
Blo10g00789 346 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 121 346 - -
Blo10g00789 346 MobiDBLite consensus disorder prediction 1 50 - -
Blo10g00789 346 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 121 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00789 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - jre:109014187 374.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00931 Blo10g00789 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00174 Blo-Chr8:1962405 Blo10g00789 Blo-Chr10:24669237 2.77E-116 dispersed
Blo10g00789 Blo-Chr10:24669237 Blo14g00346 Blo-Chr14:3762940 1.22E-99 dispersed
Blo14g00087 Blo-Chr14:642809 Blo10g00789 Blo-Chr10:24669237 6.17E-92 transposed
Blo10g00789 Blo-Chr10:24669237 Blo07g00931 Blo-Chr7:28487874 3.59E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g383 . . . . Bpe09g00207 . Bma10g00523 Bma13g00995 Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0091 Cone9ag0120 Cone14ag1109 Cone15ag1123 . . . . Blo07g00931 Blo10g00789 Bda05g00749 Bda12g00874 . Bpe03g00814 . . . . . Cma04g00930 . Car04g00872 . . Cpe01g00845 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00789 Blo_Chr10 FPKM 14.656766 14.006217 3.545232 2.42055 35.992043 35.329895 32.556759 0.0 0.0 0.0