Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00800 ATGCACGTTAAGCTCGGAGATACGGTGAAGGTTATAATGGGACGCGATAAGGGTAAAACTGGGGAAATTACGAAGATCTTTAAACATAATAGCACTGTGGTAATAAAAGATCTGAACTTGAAGACCAAGCATGTCAAGAGCAGGGAAGAAGGTGAAAAAGGACAGATCATTAAGATTGAAGCTCCGATTCACAGTTCGAATGTGATGCTTTATTCTAAGGAAAAGAATGTAGCGAGTCGAGTGGGCCATAAAATCCTTGAAGATGGAAAACGGGTTCGATACCTCATCAAAACGGGCGAAATTATCGACAGCGCTGAGAACTGGAAGAAACTAAAAGAAAGCAAGGACAAAAAAACTGAGGTTGCTACCACTTCGTGA 378 41.27 MHVKLGDTVKVIMGRDKGKTGEITKIFKHNSTVVIKDLNLKTKHVKSREEGEKGQIIKIEAPIHSSNVMLYSKEKNVASRVGHKILEDGKRVRYLIKTGEIIDSAENWKKLKESKDKKTEVATTS 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25375794 25376871 + BLOR02590 Blo10g00800 65996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00800 125 PANTHER 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC 1 121 - -
Blo10g00800 125 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 38 102 IPR003256 GO:0003735|GO:0005840|GO:0006412
Blo10g00800 125 Pfam KOW motif 6 36 IPR005824 -
Blo10g00800 125 Hamap 50S ribosomal protein L24 [rplX]. 1 97 IPR003256 GO:0003735|GO:0005840|GO:0006412
Blo10g00800 125 Gene3D - 1 101 IPR014722 -
Blo10g00800 125 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 1 121 IPR003256 GO:0003735|GO:0005840|GO:0006412
Blo10g00800 125 ProSitePatterns Ribosomal protein L24 signature. 6 23 IPR005825 GO:0003735|GO:0005840|GO:0006412
Blo10g00800 125 SUPERFAMILY Translation proteins SH3-like domain 1 101 IPR008991 -
Blo10g00800 125 TIGRFAM rplX_bact: ribosomal protein uL24 1 102 IPR003256 GO:0003735|GO:0005840|GO:0006412
Blo10g00800 125 CDD KOW_RPL26 6 70 IPR041988 GO:0003723
Blo10g00800 125 SMART kow_9 2 29 IPR005824 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00800 K02895 RP-L24, MRPL24, rplX; large subunit ribosomal protein L24 - thj:104809288 208.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00800 Blo-Chr10:25375794 Blo16g00918 Blo-Chr16:37085785 1.02E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g407 . . . . Bpe09g00201 . . Bma13g01020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00800 . Bda12g00881 . . . . . . . . . . . Cpe14g00712 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012446 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00800 Blo_Chr10 FPKM 28.758575 29.556805 22.965181 24.547953 19.227205 18.448717 20.831587 21.68716 23.444733 17.837387