Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00825 ATGAAAAGGAAAAGATCGAAGGATTTTAACAAGCAGAATCGCTTGTCGGAAGTCGGAGAAATTGAGCTTCTCAACTCATGGATTCAATCGCAGAAACCCGACTCTGGCTCCAATCCCATGTCGCTTCCTTCCCTGCCGTTAAACGCACCTATTGGTGACCTTGGTGGCGGTTTGTACTCGCGTTATGCTGGAGCCACGAGATTTGATCAGTTGCCCATTTCGAAGAAGGTCAAGGACGGATTGCGCAAAGCCAATTACACTGAGATGACTGATATACAGAGGGCCTCGCTTCCTCATGCCCTTTGCGGTCGAGATATTCTTGGTGCAGCTAAAACTGGGTCAGGAAAGACTTTGGCATTTGTCATACCGGTTCTTGAAAAATTATATAAAGAGAGATGGGGTCCCGAAGATGGTGTGGGGAGTATCATTATATCTCCAACAAGGGAGTTGGCTGTTCAGCTGTTTGAGGTGCTGAAAACTATTGGGAAACATCACAACTTCAGTGCTGGCCTCTTAATTGGTGGTAGGAAAGATGTTGACACTGAGAAGGAGCGTGTCAATGACCTGAACATACTTGTTTGTACTCCTGGTCGGCTGCTCCAGCACATGGATGAGACTCCTAATTTTGATTGTTCACAGCTTCAGGTTTTAGTTCTTGATGAAGCAGATCGAATTCTTGATGTTGGATTTAAGAAGGCCTTGAATGCAATTATTTCGCAGCTACCTAAACATAGGCAGACTATGCTATTCTCAGCAACTCAAACAAAGTCAGTTCAGGATCTTGCCAGACTCAGTTTGAAGGACCCAGAATATTTAAGTGTTCACAAGGATGCTTTGACTGCCACCCCAAATCTCTTGCAGCAAACTGCAATGATTGTGCCTTTGGAGCAAAAATTGGACATGTTATGGAGTTTCATAAAGTCTCATCTTAATTCTAAGATTCTAGTTTTCCTCTCAAGCTGCAAGCAGCAGGTAAAATTCGTATTTGAAGCTTTCAAGAAGCTGCGTCCTGGAATTCCGCTGAAATGTCTCCATGGAAAGATGAGGCAGGAGAGAAGAATAGGAATATACTCTGAGTTCTGTGAGCAACGTGCTGTTCTCTTCTCCACAGATGTAGTGTCAAGAGGTCTTGATTTTGATAAAGCAGTTGACTGGGTTGTACAGGTGGATTGTCCTGACAATGTAGATTCTTACATTCACAGAGTTGGGCGAACTGCACGCTATCAATCTAAAGGGAGATCAGTGTTGTTTCTCACTCCTTCAGAGATGAAAATGCTAGAAAAACTACAAGAACAGAAAGTTCCCGTGAATTTTGTCAAGGCAAACTTAAATAGACTTCAGCCAGTTTCTGGATTACTTTCAGCTTTATTAGTTAAGTATCCAGAAATGCAGCATCTTGCACAAAGAGCCTTCATCACTTACCTGCGATCGATAAATATGCAGAGTGACAAAGAAATTTTTGACATCACGAAAATGCCAATAGATGAGTTTTCAGCATCAATGGGACTCCCTATGACCCCAAAAGTTCGTTTTTTGAACCAGAAAATGAAGCGTATAAAAGCAAGTGAGAAGCCCAATGTGGAAAATTCTGAAAAGGGTATAGATGCAAACATAGCAGGGGAGAAGCTAGATATTGGTGACTTAGATGAAGAAATAGTGAACAAAGCGCCTCTTTCGACCGACAACATCCGAAAGGACATGGTAGACAAAGCTGGCCAAGTTGAAGATGCTATGCCGGCAACACGAGTCTCGAAGAAAAAGAAGTTAAAGATCAACATCCACAGACCAGTGGGTTCCAGAGTTGTCTTTGATGATGACGGCAATACACTTCCCCCGCTCGCCAGGATAGCTGACATAACCGATTCATTTTCGCTCGACAAAGGTATTTTCCCTACTTCCTACTGTGAAACAGCTCGGTTTTTTGTTTGTTTTTTCTTTTTGGGTTTAGTCATTTCCTGTGTAAATGTTTCAGACCAAAAGAATGAGTATTACAAGAAGATGAGAGCCGAGATGAAGCAGGCCGACAAGGAAGACAAGCTTCTAGAACAGGAGCGACTACGTGAAAAGCGGATCAAGAAGAAGATGAAGGGGAAGAAAGAAGAGGATTTACATTCAGAGTCCGATGAAGACGAAGACACGAGAGGAGACAGACCTCACAAGAAACAGAAGAAATATTTCAACAGCGAGAGCGATGAGGACGAGAAGAAAGAAAACAAAAGCACCCCAGATTTTGCAGGCGACGCCATTTCTTTGGCAGCTCAAGAGGAGCTGGCTCTTAAGTTGTTGAGTTCCATGCACAAG 2301 43.11 MKRKRSKDFNKQNRLSEVGEIELLNSWIQSQKPDSGSNPMSLPSLPLNAPIGDLGGGLYSRYAGATRFDQLPISKKVKDGLRKANYTEMTDIQRASLPHALCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAVQLFEVLKTIGKHHNFSAGLLIGGRKDVDTEKERVNDLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKALNAIISQLPKHRQTMLFSATQTKSVQDLARLSLKDPEYLSVHKDALTATPNLLQQTAMIVPLEQKLDMLWSFIKSHLNSKILVFLSSCKQQVKFVFEAFKKLRPGIPLKCLHGKMRQERRIGIYSEFCEQRAVLFSTDVVSRGLDFDKAVDWVVQVDCPDNVDSYIHRVGRTARYQSKGRSVLFLTPSEMKMLEKLQEQKVPVNFVKANLNRLQPVSGLLSALLVKYPEMQHLAQRAFITYLRSINMQSDKEIFDITKMPIDEFSASMGLPMTPKVRFLNQKMKRIKASEKPNVENSEKGIDANIAGEKLDIGDLDEEIVNKAPLSTDNIRKDMVDKAGQVEDAMPATRVSKKKKLKINIHRPVGSRVVFDDDGNTLPPLARIADITDSFSLDKGIFPTSYCETARFFVCFFFLGLVISCVNVSDQKNEYYKKMRAEMKQADKEDKLLEQERLREKRIKKKMKGKKEEDLHSESDEDEDTRGDRPHKKQKKYFNSESDEDEKKENKSTPDFAGDAISLAAQEELALKLLSSMHK 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26084658 26090498 - BLOR02615 Blo10g00825 66021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00825 767 Coils Coil 664 701 - -
Blo10g00825 767 Pfam Helicase conserved C-terminal domain 298 408 IPR001650 -
Blo10g00825 767 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Blo10g00825 767 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 547 - -
Blo10g00825 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 274 IPR027417 -
Blo10g00825 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Blo10g00825 767 CDD SF2_C_DEAD 286 418 - -
Blo10g00825 767 PANTHER RNA HELICASE 57 547 - -
Blo10g00825 767 CDD DEADc_DDX10 78 275 - -
Blo10g00825 767 Gene3D - 281 532 IPR027417 -
Blo10g00825 767 SMART ultradead3 85 288 IPR014001 -
Blo10g00825 767 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Blo10g00825 767 SMART DUF4217_3 448 511 IPR025313 -
Blo10g00825 767 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Blo10g00825 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 447 IPR001650 -
Blo10g00825 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 425 IPR027417 -
Blo10g00825 767 MobiDBLite consensus disorder prediction 691 742 - -
Blo10g00825 767 Gene3D - 59 278 IPR027417 -
Blo10g00825 767 SMART helicmild6 323 409 IPR001650 -
Blo10g00825 767 MobiDBLite consensus disorder prediction 691 747 - -
Blo10g00825 767 Pfam Domain of unknown function (DUF4217) 453 509 IPR025313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00825 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - qsu:112032940 1024.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00825 Blo-Chr10:26084658 Blo16g00145 Blo-Chr16:3232204 4.31E-105 dispersed
Blo19g00316 Blo-Chr19:20408957 Blo10g00825 Blo-Chr10:26084658 4.83E-49 dispersed
Blo10g00825 Blo-Chr10:26084658 Blo07g00769 Blo-Chr7:24850765 7.39E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00825 Blo_Chr10 FPKM 2.495017 3.624535 1.675407 1.895383 8.865706 7.645656 9.696923 3.276348 2.902153 3.205189