Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00843 ATGGCAAATTTGCCTCAATCCCTCTCTTTGAACGCACCGTTTGGCGCTCAGAGCGTGGCGACGGCGGGCGGAATTCCGGTGACCAAGGATCGGAAAATGGCGTCGGCTGAGCACTTGGTGCTCGACCTCAGCAACCCCGATCTTCGGGAGAACGCCCTTCTTGAACTCTCTAAGAAGAGGGAATTATTTCAAGACTTGGCTCCATTGCTGTGGAATTCCTTCGGTACCATTGCAGCATTGTTACAGGAAATAGTTTCGATCTACCCTGTTCTTTCACCACCCAACCTGACTCCTGCCCAATCAAATCGTGTTTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCTTCTCACCCAGACACAAGGATGTTGTTCCTCAACGCTCATATACCTCTGTATCTTTACCCTTTTTTAAACACAACCAGCAAGTCGAGGCCTTTTGAGTACCTTCGGCTCACTAGCTTAGGTGTTATTGGTGCGCTAGTAAAGGTGGACGACACTGAAGTTATCAGCTTCCTTCTATCTACGGAGATAATTCCCTTGTGTTTGCGCACTATGGAAATGGGGAGTGAATTGTCAAAAACAGTTGCGACATTTATTGTGCAGAAAATTTTGTTGGATGACGTGGGGTTGGACTATATTTGCACCACAGCAGAACGCTTTTTTGCAGTTGGACGTGTTTTGGGGAATATGGTAGCAGCACTTGCTGAGCAGCCCTCTTCTCGTCTTTTGAAGCATATTATTCGTTGTTATCTTCGCTTATCGGATAATCCTCGGGCATGTGATGCATTAAGAAGCTGCCTTCCGGACATGCTAAGAGACGCCACTTTCAGTAGCTGCCTTCGTGAAGATCCAACCACAAGGAGATGGCTACAACAATTGCTCCACAACGTCGGAATGAATCGGGTGCCGGGGCTTCAAGCCGGAGCGGGATTCGATCATATGATGCTTGATGATGTAATTGAAGCCCAACAATTTGATAGAGACACCATGAATGCTATATTTGGGGTTACACGAGAAATGGAGAAAATTGAAAAACAATCACCTGGAAGCCAAATGCTTAAGGGTTATTTGATGGCCACTCTCTTTTATGAGCCGTCTACAAGAACGAGGCTTTCTTTTGAATCTGCCATGAAGCGATTGGGAGGAGAAGTGCTGACAACTGAAAATGCAAAGGAGTTTTCATCTGCAGCTAAAGGTGAAACTCTTGAAGATACTATACGAACTGTTGAGGGTTACTCTGACATAATTGTAATGAGACACTTCGAAAGTGGTGCTGCAAGAAGAGCTGCTGCAGTAGCAGATATTCCAGTTATTAATGCAGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTTTGGACGTATACACAATTGAAAGAGAGCTCGGTAAAGTTGACGGGGTAAAAGTTGGGCTTGTTGGAGATCTTGCCAATGGACGAACCGTCCGTTCACTTGCGTATCTACTTGCCAAGTATGAAGATGTGAAAGTTTACTTGGTCTCTCCCGATGTTGTTAAGATGAAGGATGATATAAAAGATTATTTGACATCAAAGAATATTGAATGGGAAGAGAGCAATGATTTGATGGACGTTGCTTCAAAGTGCGACGTGGTCTATCAAACTCGGATTCAACGGGAACGGTTCGGGGAGAGAATTGACCTTTACGAAGAAGCGAGAGGGAAGTACATTGTGGATGAGAGTGTGTTGAAAGTGATGCAGAAACATGCCATTGTCATGCACCCTCTTCCAAGGCTGGATGAAACTTTTAATGTTTTCTTCAAATGGATCACCATTGATGTTGATGGAGATCCAAGAGCTGCCTATTTCAGACAAGCTAAGAATGGTCTCTACATTAGGATGGCTCTCCTCAAACTCTTACTTCTTGGATGGTGA 1893 44.96 MANLPQSLSLNAPFGAQSVATAGGIPVTKDRKMASAEHLVLDLSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGMNRVPGLQAGAGFDHMMLDDVIEAQQFDRDTMNAIFGVTREMEKIEKQSPGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAKEFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAAVADIPVINAGDGPGQHPTQALLDVYTIERELGKVDGVKVGLVGDLANGRTVRSLAYLLAKYEDVKVYLVSPDVVKMKDDIKDYLTSKNIEWEESNDLMDVASKCDVVYQTRIQRERFGERIDLYEEARGKYIVDESVLKVMQKHAIVMHPLPRLDETFNVFFKWITIDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26889489 26900133 + BLOR02633 Blo10g00843 66039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00843 630 SUPERFAMILY ARM repeat 41 297 IPR016024 -
Blo10g00843 630 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 466 625 IPR006131 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN 295 630 - -
Blo10g00843 630 Gene3D - 28 298 IPR011989 -
Blo10g00843 630 Gene3D Aspartate/ornithine carbamoyltransferase 319 623 IPR036901 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 362 381 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 592 615 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 447 458 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 574 583 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 Hamap Aspartate carbamoyltransferase [pyrB]. 316 629 IPR002082 GO:0004070|GO:0006207
Blo10g00843 630 PRINTS Aspartate carbamoyltransferase signature 446 463 - -
Blo10g00843 630 PRINTS Aspartate carbamoyltransferase signature 352 374 - -
Blo10g00843 630 PRINTS Aspartate carbamoyltransferase signature 608 622 - -
Blo10g00843 630 PRINTS Aspartate carbamoyltransferase signature 392 401 - -
Blo10g00843 630 PRINTS Aspartate carbamoyltransferase signature 538 547 - -
Blo10g00843 630 TIGRFAM asp_carb_tr: aspartate carbamoyltransferase 318 627 IPR002082 GO:0004070|GO:0006207
Blo10g00843 630 Pfam Cell differentiation family, Rcd1-like 39 297 - -
Blo10g00843 630 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 313 627 IPR036901 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 362 369 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 Gene3D Aspartate/ornithine carbamoyltransferase 447 614 IPR036901 GO:0006520|GO:0016597|GO:0016743
Blo10g00843 630 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 295 630 - -
Blo10g00843 630 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 318 459 IPR006132 GO:0006520|GO:0016743
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00843 K12606 RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9 - pop:7483613 591.267
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00893 Blo10g00843 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00843 Blo-Chr10:26889489 Blo13g00409 Blo-Chr13:23754275 4.90E-92 dispersed
Blo01g01571 Blo-Chr1:55455270 Blo10g00843 Blo-Chr10:26889489 4.47E-18 transposed
Blo10g00843 Blo-Chr10:26889489 Blo07g00893 Blo-Chr7:27743872 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g550 . . . . Bpe09g00162 . Bma10g00565 Bma13g01070 . . . Cma09g00964 Car01g00990 Car09g00879 . Cpe06g00779 Cpe02g00784 Bhi09g01681 . . . Hepe01g1257 . . . . . . . . . . . . Cone15ag1177 Lsi02g01890 Csa07g01111 . . Blo07g00893 Blo10g00843 Bda05g00710 . . . . . . Cmo01g01165 Cmo09g00966 . . . . . . . . . . . . . Cla09g01025 Cam09g1080 Cec09g1079 Cco09g1100 . . Cre09g1045 . . . Cme01g01013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004472 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12853 PF04078 Rcd1 1.40E-129 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00843 Blo_Chr10 FPKM 56.352867 56.358425 38.208775 37.541599 54.716045 55.095463 56.155693 39.246635 37.927353 36.728359