Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00872 ATGGGTGTGAATGATCGGAAAAATGCTACAGACTCACCAAACCCAAAGCCTGAGGTTGGGGAAATAGACACAAGTGCGCCATTCCAATCTGTAAAAGATGCCCTCTCTTTGTTTGGTGTCGGGGCTTTTTCAGGGGAAAAACCGGCCATTAGGAAGGTTAAACCTCATTCTGCGGAGAGAGTGTTGGCAAAAGTGACCCAACTCCACCTAGCAGAGAGAGAACTGAACAAGATGAAAGAGCAGCTAAAGAATGCAGAAACTACAAAAGCTAAAACACTTGTGGAGCTGGAAAAGGCTAAAAGAACTGTTGAAGATCTAAACTATAAATTGAAGTCCCTTATTGAATCGAAAGAATGTGCGATTGAGATAACAGAGAAGGCTAAATCTCAAGCGAAGCAGCTTGGGGAGGCAAATGGAAGCAAAATCGGTGAAATCGAAGGTTCTAGGAAAGAAGACATGGATATTGCAAGAGATCAATACATGTCAGCAATTTCGGAGCTGGATGCTGCTAAGAAAGAACTAGGGAGGATCCGTCAAGAATCTGATTCATCTTTGGAAGCTAAAGTTACTGCCTTGAAACAAACTGCAGAGGCCGAATCTGCAGCTAAAGTTCACCAAGAGAGAGCTAATGATCTTTCCAAGGAGATTTTAGTTGCACAAGAGTCGATTGAACAGCTGAAACTTGCTTCCTTGGAGGCCCAGAAAAAGCAGGAATTGCTATTAGCCAAAAAGGGTGCTCTGAGGCAGTCATATAAAGTAAGCGTCGAAGAGTCTGCCCAGAAGTTGAGTGCCTTGAAGAAAGAGTTTGATCCGAAAGTTGTCCAAAATCTTGAATCACAGCTGGCTGAAAAGACGAATGAAATAGGGGTTCTCCAAAAGCAAATGGAAGAAACAAAAGCTTTGGATTTAAATTCAGTGAAGGCTGTCACTTTGGAGCTGGATGATGCAAAAGAGTCTCTTCAGAAAGTTTTGGAAGAGGAAAGATCCCTTCGGAGCTCCGTGGAAGCTCTTAAATTGGAGTTAGAAGCTGTAAAGAAAGAGCATACTGAGCTGAAGGAGAAGGAAGCAGAAACAGAATCCATTGCTGGTAATTTACACGTTAAACTCCGGAAGAGCAAGTTGGAGCTTGAATCATTCATCGCAGAAGAATCTAAAACAAGAGGAGCCTGTGAGGAAATGATCTTGACCCTTAATCAGTTGTCATCAGAAACTGAAAATGCTCGAAGAGAAGCAGATGAAATGAAAAACAAAGCTGAAGAATTGAAGAAGGAAGCTCAATCCACCAAAATTGCATTAGAGGAGGCTGAGAAGACACTAAGAGTTGCTCTGGAGGAAGCCGAAGAGGCCAAAGCAGCCGAGGTAAAGGCCCTTGATCAGATTAAGGTCCTTTCTGAAACAACAACTGCAGCTCGGGCCTCAATTTCTGAATCTGGTGCAAAAATCACAATCTCGAGTGAAGAGTTCGAGTCTTTGAGCCGAAAAGTTGGAGAGTCAGACACATTGACCGAAATGAAGGTGGCTGCAGCTCTGGCTCAGGTAGAAGCCGTAAAGGCCAGCGAAAATGAGGTTCTCAAGAAGTTGGAAACAATTCAAAAGGAGATTGAGGACATGAAGAAGACAACAAATGAGGCATTGAAGAGAGCAGATATGGCTGAAGCAGCCAAAAGGGCAGTGGAGGGAGAGCTACGTAGATGGCGAGAAAGAGAGCAAAAGAAGGCAGCTGAAACTGCATCACAAATATTGGCGGCAACAGAGATGTCCTCAGAACCATCTTCCCACCTTTACAGGATCCAAGCCCAGAAATCTCCAGCGAAAATTATTGAAACCCAAAAATTGGAAAAAGAGAAAACCTTCTCGAAGAAAGCTCTTTTACCAAATCTTAGCGGCATTTTTCAGCGGAAGAAGAATCAGGTCGATGGTGGGTCACCCTCTTATCTGCCTGGAGAGAAACCTAGGACAAGAGCTTCAGCAGTTGAGCTCGGAAGTGCGTCGATCGAGTTGTCGTTTTGTATAAGAGACGAGAGTGGAAGCATTAATGTGTTTGTTCTTGCTTCTCTGGGTGATAAATGCTGGTTGAGGCTTGTTATCAGTCTTTCTCATCTCATTTCAAATTCTTCTCATGTTTCTACTGGCTTTTCTGCTCAAGACTGTAAAGCTTTCTTGTGGGCGCTGGCAATCTATAAGGGCACGAAAGCTGGCAAGCTAGGCGTAGAAGATTGTGGGTTATTATTTCAGTCTTCCACGCACTGA 2250 43.73 MGVNDRKNATDSPNPKPEVGEIDTSAPFQSVKDALSLFGVGAFSGEKPAIRKVKPHSAERVLAKVTQLHLAERELNKMKEQLKNAETTKAKTLVELEKAKRTVEDLNYKLKSLIESKECAIEITEKAKSQAKQLGEANGSKIGEIEGSRKEDMDIARDQYMSAISELDAAKKELGRIRQESDSSLEAKVTALKQTAEAESAAKVHQERANDLSKEILVAQESIEQLKLASLEAQKKQELLLAKKGALRQSYKVSVEESAQKLSALKKEFDPKVVQNLESQLAEKTNEIGVLQKQMEETKALDLNSVKAVTLELDDAKESLQKVLEEERSLRSSVEALKLELEAVKKEHTELKEKEAETESIAGNLHVKLRKSKLELESFIAEESKTRGACEEMILTLNQLSSETENARREADEMKNKAEELKKEAQSTKIALEEAEKTLRVALEEAEEAKAAEVKALDQIKVLSETTTAARASISESGAKITISSEEFESLSRKVGESDTLTEMKVAAALAQVEAVKASENEVLKKLETIQKEIEDMKKTTNEALKRADMAEAAKRAVEGELRRWREREQKKAAETASQILAATEMSSEPSSHLYRIQAQKSPAKIIETQKLEKEKTFSKKALLPNLSGIFQRKKNQVDGGSPSYLPGEKPRTRASAVELGSASIELSFCIRDESGSINVFVLASLGDKCWLRLVISLSHLISNSSHVSTGFSAQDCKAFLWALAIYKGTKAGKLGVEDCGLLFQSSTH 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27491576 27494521 + BLOR02662 Blo10g00872 66068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00872 749 Coils Coil 153 180 - -
Blo10g00872 749 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED 4 628 - -
Blo10g00872 749 MobiDBLite consensus disorder prediction 1 25 - -
Blo10g00872 749 Coils Coil 68 116 - -
Blo10g00872 749 Coils Coil 306 361 - -
Blo10g00872 749 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 4 628 - -
Blo10g00872 749 Pfam Weak chloroplast movement under blue light 248 571 IPR008545 -
Blo10g00872 749 Pfam Weak chloroplast movement under blue light 21 237 IPR008545 -
Blo10g00872 749 Coils Coil 520 568 - -
Blo10g00872 749 Coils Coil 390 463 - -
Blo10g00872 749 Coils Coil 195 229 - -
Blo10g00872 749 Coils Coil 274 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00872 - - - zju:107433951 842.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00959 Blo-Chr1:24744965 Blo10g00872 Blo-Chr10:27491576 4.63E-108 dispersed
Blo10g00197 Blo-Chr10:2504790 Blo10g00872 Blo-Chr10:27491576 1.68E-33 dispersed
Blo10g00872 Blo-Chr10:27491576 Blo12g00955 Blo-Chr12:27690874 7.23E-29 dispersed
Blo10g00872 Blo-Chr10:27491576 Blo11g00164 Blo-Chr11:1287178 5.59E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00872 Blo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.17018 0.373945 0.0 0.0 0.0 0.0