Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00874 ATGGGTTTGCTTGATTCGTTGCTTGGAACAGACGCCAAAAAGTTCATCATCAAACGGAAAGACAGCGATGCTGGAGAAGCAGGTCGAGCTTTTGAGGAACTCAGAAGTGCTCTCTACAATGATATACGAAGCTCCGAAGGAGCGAAACGACAACAGCAACGACTGTGCGGACCTCTGGTGGCAATGTCGTTCAATTTCATGGTTGCTGTCGGGATTATTTTGGCAAACAAAGTAGTTATGAGAGAAGTTGGATTCAAGTTCCCTATATTTCTCACTTTGATCCATTACGTCGTTTCTTGGCTTCTGCTAGCAATTTTCAAGGGGCTTTCCTTACTTCCCGTCTCTCCACCTAGCAAGACAACTCCTTTCTCGTCTCTATTCGCCTTGGGCGCCGTAATGGCTTTTGCCTCCGGTCTGGCCAACACTAGCCTCAACCATAACAGTGTTGGATTCTATCAGATGGCGAAAATCGCAGTCACTCCGACCATCGTTTTGGCAGAGTTCATCCTTTTCAACAAAACCATATCATTCAAAAAGTTGAGCAGATTTCTTATTCGATCTGCTGTTTTGGCTCTGACCGTTGTGTCTGCTGGTGTGGCGATAGCGACTGTCACCGATCTAGAGTTCAACTTATTCGGCGCGCTGATTGCAATCGCGTGGATAATTCCGAGCGCGGTGAATAAGATCCTCTGGTCGAGTCTACAACAGCAAGGCAATTGGACGGCTTTAGCGTTGATGTGGAGAACAACCCCAGTGACAATCTTCTTCTTATTGGCTCTCATGCCATGGCTGGACCCACCGGGAGCTCTGTCGTTTGAGTGGAATCGCGACAGCACGACCGCCGTTCTGATCTCGGCTTTGCTCGGTTTTTTGCTTCAATGGTCCGGCGCTCTGGCTCTCGGGGCAACCTCGGCGACATCCCATGTTGTTTTGGGACAGTTGAAAACTTGCGTGATTTTGGTCGGAGGGTATCTTGTTTTTGGGTCGGATCCCGGGTTTGTGAGCATCTGCGGAGCCGCTCTGGCTCTTTCCGGGATGGCTGTTTATACATTTCTCAATCTTCAGGAAGGTTCGGGTAATGGTAGGCTGCTTCCGAACCATAACTCCGCTTCGTCTGTACACGAACGAAGAAGCGAAGCAGAAGACATTCCATATTCCGATGTAAAAATCGTTTCAGCTGTC 1182 48.73 MGLLDSLLGTDAKKFIIKRKDSDAGEAGRAFEELRSALYNDIRSSEGAKRQQQRLCGPLVAMSFNFMVAVGIILANKVVMREVGFKFPIFLTLIHYVVSWLLLAIFKGLSLLPVSPPSKTTPFSSLFALGAVMAFASGLANTSLNHNSVGFYQMAKIAVTPTIVLAEFILFNKTISFKKLSRFLIRSAVLALTVVSAGVAIATVTDLEFNLFGALIAIAWIIPSAVNKILWSSLQQQGNWTALALMWRTTPVTIFFLLALMPWLDPPGALSFEWNRDSTTAVLISALLGFLLQWSGALALGATSATSHVVLGQLKTCVILVGGYLVFGSDPGFVSICGAALALSGMAVYTFLNLQEGSGNGRLLPNHNSASSVHERRSEAEDIPYSDVKIVSAV 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27514834 27517436 - BLOR02664 Blo10g00874 66070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00874 394 PANTHER OS06G0297600 PROTEIN 17 361 - -
Blo10g00874 394 Pfam Triose-phosphate Transporter family 65 349 IPR004853 -
Blo10g00874 394 PANTHER SOLUTE CARRIER FAMILY 35 17 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00874 - - - csv:101203997 581.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00448 Blo-Chr8:9217945 Blo10g00874 Blo-Chr10:27514834 2.86E-164 dispersed
Blo10g00874 Blo-Chr10:27514834 Blo18g00833 Blo-Chr18:24584432 7.70E-32 dispersed
Blo10g00874 Blo-Chr10:27514834 Blo03g01087 Blo-Chr3:37332283 1.78E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00413 . Cme06g02761 . Blo10g00874 . . . . . . . . . . . . . Cpe14g00778 . Bhi11g00458 . . . . . . . . . . . . . . . Chy06g01899 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001987 2 5 2 0 1 2 3 2 2 2 2 2 3 2 2 2 2 3 3 2 2 2 2 2 1 2 1 4 4 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00874 Blo_Chr10 FPKM 42.911297 46.87735 47.366562 46.433426 63.369637 63.391888 56.732883 35.773987 41.151134 38.563171