Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00875 ATGGAAATTAGGAAAGAAGAAGACAACATGGAGGACAGGTCTTTGTCTCCCCCAACAATGGGGTCTATGCAGATTGCAGGAAGCAATGGGTTTGGCCATAACATTGAATTCATGTCTCAAGCTTACCTCAGAAACAGACACTCAGAGATTGATGTTGAAGAAGACAGTTTCTGCACCAGCAAGGATCACCCTCTTCCTATTTTTCTCAAGTTTGAAGATGTGGAGTACAGGGTGAGAATGAGACAGAGTTCAAGCAAAGAGAGAGAGAGAACAAAGGAAGAGAAATACAAGCAAATTCTCAAGGGAATAACAGGAGGGATTGGCCCTGGAGAGGTTCTTGCTCTGATGGGTCCCTCAGGCAGTGGCAAGACAACCTTATTGAAGGTTCTCGGCGGAAGATTACTCGACAACGTCAAAGGAAACATAACTTATAACGACGTCTCCTACACGCCCGCCCTCAAGCGACGTATCGGTTTTGTCACGCAAGATGATGTGCTCTTCCCGAATCTAACCGTCGAGGAAACATTGCTTTTCTCGGCCTCCTTGAGGCTCCCGAGCGACATGTCTCAACAAGAAAAGTACGGTCGGGTGGAGACGATCGTGAAGGAGCTAGGCCTCGAGAGATGTCGTCATACGAGAGTTGGCGGGGGGTTCATGAAAGGAATTTCCGGAGGAGAACGAAAAAGAACAAGCATTGGCTATGAAATTCTAGTCGATCCGTCGTTGTTATTGCTCGATGAACCGACTTCCGGCCTTGACTCCACCTCTGCAAATAGGCTCATATCAGTTCTCCAAGGACTAGCTAAATCTTTTTTGCAGGCTGGTCGGACGATAGTTACAACGATACACCAGCCATCGAGCAGGACGTTTCACATGTTCGATAAACTTCTTTTAATATCCGAAGGGCAGCCGGTGTACTACGGGAGGGCTAGAGACTCAAGTGACTACTTTTCATCCTTGAGTTTCATACCCGAAATTCCAATGAATCCTGCAGAGTTTCTTCTCGATTTAGCGACCGGACAAGTCAACGATATACGGGTTCCCGACGATATATCAGCAGCTCAAGAGGCTGCAAGCTCTGAAAAAGCCGTGATCAAGTATCTGCAATTCAAATACAAAACTCTGTTGGACCCGAAAGAAAACGACAAAAATCGAACGGCAACAGTGCCGGAGCATCTTCAGGCAGCGATTCAGGTGAAGAAATACTGGACAATTTCATGGTGGCAACAGTTCCTGATAGTCTCAAAAAGAACATTCAAGGAAAGACAGAGAGATTACTTTGATAAAATAAGACTAATTCAAGCTGTTGGAGTTGCAGTTCTGTTAGGACTTCTATGGTGGAAATCCAGTACTGATACAGAAGCTCATCTGAGAGACCAGGTCGGTTTGATGTTCTATGTCTGCATATTTTGGACGTCCACGTCGATTTTCGGGGCGGTTTATGTTTTCCCGTTCGAGAAAATTTATCTGGTGAAAGAACGGAAGGCGGATATGTATCGATTGAGCGTTTATTACGTATGCAGCACGATGTGCGATATGGTAGCTCATGTGCTTTATCCGACATTTTTCATGACCATACTCTACTTCATGGCTGGTTTCAAAAGAACACTCCCCTGTTTCTTCTTCACCCTGTTTGCCATCCTTCTTGTAGCTGTTACAAGCCAAGGGGCAGGGGAGCTGTTTGGAGCTGCAGTTCTGAGTATCAAAAGGGCAGGAACAGTAGCTTCTCTCATACTGATGCTGTTTCTTTTAACTGGAGGTTATTATGTGCAGCACATCCCGAAGTTCATGCAATGGCTGAAGTACTTATCATTTATGTACTATGGGTTTAGGCTTCTGTTGAAAGTTCAATATTCAGGAGATGATTTGTATGAATGTGGAAGCAGAGGAGGATGCAGGCCTCTTCAGAGCTCCCCTTCTTTTGATACCATCAACTTGAATGGTGGATTGCAAGAAGTTTGGATTTTGCTTGCTATGGCTCTAGCTTATCGATTTCTCGCTTATTTTGCGTTGCGTAATCGGATCACTATTTCCAATCTTTAA 2043 44.88 MEIRKEEDNMEDRSLSPPTMGSMQIAGSNGFGHNIEFMSQAYLRNRHSEIDVEEDSFCTSKDHPLPIFLKFEDVEYRVRMRQSSSKERERTKEEKYKQILKGITGGIGPGEVLALMGPSGSGKTTLLKVLGGRLLDNVKGNITYNDVSYTPALKRRIGFVTQDDVLFPNLTVEETLLFSASLRLPSDMSQQEKYGRVETIVKELGLERCRHTRVGGGFMKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLISVLQGLAKSFLQAGRTIVTTIHQPSSRTFHMFDKLLLISEGQPVYYGRARDSSDYFSSLSFIPEIPMNPAEFLLDLATGQVNDIRVPDDISAAQEAASSEKAVIKYLQFKYKTLLDPKENDKNRTATVPEHLQAAIQVKKYWTISWWQQFLIVSKRTFKERQRDYFDKIRLIQAVGVAVLLGLLWWKSSTDTEAHLRDQVGLMFYVCIFWTSTSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTMCDMVAHVLYPTFFMTILYFMAGFKRTLPCFFFTLFAILLVAVTSQGAGELFGAAVLSIKRAGTVASLILMLFLLTGGYYVQHIPKFMQWLKYLSFMYYGFRLLLKVQYSGDDLYECGSRGGCRPLQSSPSFDTINLNGGLQEVWILLAMALAYRFLAYFALRNRITISNL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27542831 27546354 + BLOR02665 Blo10g00875 66071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00875 680 Gene3D - 84 319 IPR027417 -
Blo10g00875 680 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 4 674 - -
Blo10g00875 680 SMART AAA_5 109 303 IPR003593 -
Blo10g00875 680 Pfam ABC transporter 100 250 IPR003439 GO:0005524
Blo10g00875 680 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 326 IPR003439 GO:0005524
Blo10g00875 680 Pfam ABC-2 type transporter 409 618 IPR013525 GO:0016020|GO:0140359
Blo10g00875 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 317 IPR027417 -
Blo10g00875 680 MobiDBLite consensus disorder prediction 1 27 - -
Blo10g00875 680 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 674 - -
Blo10g00875 680 Pfam ABC-2 type transporter 283 343 IPR043926 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00875 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - zju:107416341 1090.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00875 Blo-Chr10:27542831 Blo07g00944 Blo-Chr7:28708043 5.78E-179 dispersed
Blo10g00875 Blo-Chr10:27542831 Blo01g01256 Blo-Chr1:47825375 2.64E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g710 . . . . Bpe09g00114 . . Bma13g01127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00875 . Bda12g00978 . . . . . . . . . . . Cpe14g00776 . . . . . . . . . . . . . . . Lsi05g00513 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011919 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00875 Blo_Chr10 FPKM 3.811157 3.978534 12.333914 13.955042 10.805402 12.844613 13.096928 7.401989 6.453941 7.298679