Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00889 ATGGCAGCGACCTCCTCCTCCGCCTTATTCTCTGCTCCGGCCTTCTCTTCTACCTCCCAAAGGCACCACCTCACCCCCTCTAACCTCTCTTTTCAAGGTCTCAGACCCCTCCCCAAGGTCGCCGCACCCACCAAGCTCAACCTGGCCACCGCCTCAAAAAAACCCAGGAGGGTTTGCCCGGTTAGGGCCGAGCTGAACCCGTCTCTGGTCATCAGCCTCAGCACTGGCCTATCCCTCTTCTTGGGCCGGTTCGTCTTCTTCAATTTCCAGAGGGAGAACGTGGCAAAACAAGTGCCGAGCCAAAACGGATTGACTCACTTCGAAGCCGGCGACACCAGAGCCAAAGAGTACGTCAGCCTACTCAAATCAAACGACCCGGTCGGGTTCAACATCGTGGATGTTCTCGCTTGGGGCTCCATCGGCCATATAGTTGCTTACTACATCTTGGCCACCTCTAGCAACGGCTACGATCCGAACTTCTTC 483 56.31 MAATSSSALFSAPAFSSTSQRHHLTPSNLSFQGLRPLPKVAAPTKLNLATASKKPRRVCPVRAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPNFF 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27873038 27873520 + BLOR02679 Blo10g00889 66085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00889 161 ProSitePatterns Photosystem I psaG and psaK proteins signature. 128 145 IPR000549 GO:0009522|GO:0015979|GO:0016020
Blo10g00889 161 PANTHER BNAC03G70700D PROTEIN 3 161 - -
Blo10g00889 161 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 3 161 IPR016370 -
Blo10g00889 161 Pfam Photosystem I psaG / psaK 67 156 IPR000549 GO:0009522|GO:0015979|GO:0016020
Blo10g00889 161 PIRSF PsaK 1 161 IPR016370 -
Blo10g00889 161 TIGRFAM PS_I_psaG_plant: photosystem I reaction center subunit V 70 157 IPR017494 GO:0009522|GO:0009535|GO:0015979
Blo10g00889 161 Gene3D - 67 161 IPR023618 GO:0009522|GO:0015979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00889 K08905 psaG; photosystem I subunit V - jre:108985982 243.817
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g784 . . . . . . . Bma13g01142 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1271 Cone15ag1297 . . . . . Blo10g00889 . Bda12g00989 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011324 1 1 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 2 2 1 1 1 1 1 1 1 0 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00889 Blo_Chr10 FPKM 37.840466 37.193104 28.712046 25.396057 19.759657 22.043242 22.088835 32.445259 37.441067 45.295532