Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00890 ATGTCTACCTCTCTTAATCAGCATCTATCTGAGAATCCTATAATTGCTGAGAGCCCTCCACCTACTTCGTCTCATCATCAACAGCGGCAGGAGCTTCTGAGTGAGAGGCCAAATGGGCCATTACCAGTCTCTACCTCCTCAGTCAGCGCCACCAGAACTTACCCTTCTGCTGCTGCTAAGTATGAGGATGTTGCTAAATGTTCGGAGCTTTTCTGGGAAAAGCTCAAGGGTTTTCATGAATCGTTTGGAACTAAATTCTCGGTTCCTACGGTCGGAGGAAAGTCTCTAGATCTACACCGCCTTTTTGTGGAAGTCACCTCTCGAGGTGGCCTGGAAAAGGTTATAAGAGAACGGAAATGGAAGGAACTAGTCGGTGTCTTTAACTTCCCAACGACCATTACAAGTGCATCATTTGTGTTACGGAAGTACTATCTATCATTACTTTATCACTTCGAGCAGGTCTATTACTTCCAAAAACACAACATCGCAATGTCCCCTCCTGCCCAAGACACTGCAAGCAAAAGCCATGAAAATGGATCTATAAATGTGAAGAAAGGCGAGATCATGGCCAAGTTGCAAGATTGTTCAGATCTGCAGCTCGGCTGTTCGGTGACCGGAACCATAGATGGAAAATTCGATAATGGATATCTAATTACTGTCAACATTGGATCGAATCAACTTAAAGGCGTTTTATATCATGTACCTCTCACAGTTTCTCAAAATGGTGCGGCCTTGTCTCCTCGTCGGGGCCGAAAACGATCTAGGCTGGAATTAAGGGATCCGGAACGGCCCAAATCAAACAGGAGTGGATACAACTTCTTCTTCGCTGAGCATTATGCAAGGCTGAAACCTTCCTATCACGGGCAAGAGAGGGCTATTAGCAAGAAAATTGGCATCCTATGGAACAATCTCACCGAGGCCGAAAAGGAGGAACTTTTTATAGCAAATGGAATATCGAGCGCTCAACAAGGCAACCTACACCATCAAGAACAAGTATCCATTTTGATTGCAGACTTTTTCGCCCTAATCAATAAGCGCAAAATACTTCTCGAAGTAGAATCTACGGCTGCCATGGCTAATGACACCTCTGGATTATGCATCAAGCTCCAGTTTCCGAAAAGTTCAAAACCACCTGAAAATCGAGAAGAAGGAAGTGGTGGTGGTGGTGGAGGAGGAGGAGAAGAAGAATCTTCGACAAAATTACGACCTTTTTTCCGATTCTGCATTGTCTGCAACAAGGGGTTCAGCTCCGGCAAAGCTTTGGGCGGCCATATGAGAATGCACGTTCAAGTCAAGAAAAAGGTCGGCGACGAGCTGTGTAATGATGGAGGTCGGAGCGGAAACCATGTTTGTTTTTTGTGCCTGAAGGTTTTCCCGTCGACGAAGTCTCTGTTTGGACATATGCGGTCTCATCCGGAAAGACCGTGGAGGGGAATTCAGCCGCCGCAGGTGGTGAATTGGCACAGCTCGTCGTCTACTCTTTCCGATGTGGACTCGCCGGAGTTTAAATTGGATGATCGTATCGATACAGCTGGTACGACAAGGGCTCCGGCCGTGGACTTGTCGAAGTCTCTTACGCATTGGCCGGTCACGGCTAAAAGAGGCCGGGCAAGCGTTTCTTCAGCTGCAGCTTCTGATTCTGGCTCTGCGTTGGAGGATCGGCTGCAGGACGCTGCTTCTGGTGAATTAGACGATGAAAAACCAGAGTTTGAGATGGGAATGAAAAAGTTAAAGAGAAATAAGGCTAAAAAGATGAGAATAGTTGATTTGGAAACAGAAGAAGCTGTCGCCGGTGAAGCGAGGAAGACAACAGTGAAACAGCCGGAGAACTGTAACCTATACAGATGCAGTACTTGCGGTAAAACATTTTCGACCCACCAAGCTTTGGGTGGCCACAGGTCAAGCCATAACAAAGGGAAGAACATTTACGCCGTTGAAGCTCAGGCTGAAGCTCAAGTGAAAGAAGGAGAAAGTGAGAAAGAAAGGAGAACCTTGGTTTTTGATCTCAACGAGCTTCCACCTCTGAACGAAGAAGAAGAAGCAGAAGTCGCTAAAAATGGCGATTTTAATGGTCTTTTGCAGAGAAGTTAG 2091 46.39 MSTSLNQHLSENPIIAESPPPTSSHHQQRQELLSERPNGPLPVSTSSVSATRTYPSAAAKYEDVAKCSELFWEKLKGFHESFGTKFSVPTVGGKSLDLHRLFVEVTSRGGLEKVIRERKWKELVGVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFQKHNIAMSPPAQDTASKSHENGSINVKKGEIMAKLQDCSDLQLGCSVTGTIDGKFDNGYLITVNIGSNQLKGVLYHVPLTVSQNGAALSPRRGRKRSRLELRDPERPKSNRSGYNFFFAEHYARLKPSYHGQERAISKKIGILWNNLTEAEKEELFIANGISSAQQGNLHHQEQVSILIADFFALINKRKILLEVESTAAMANDTSGLCIKLQFPKSSKPPENREEGSGGGGGGGGEEESSTKLRPFFRFCIVCNKGFSSGKALGGHMRMHVQVKKKVGDELCNDGGRSGNHVCFLCLKVFPSTKSLFGHMRSHPERPWRGIQPPQVVNWHSSSSTLSDVDSPEFKLDDRIDTAGTTRAPAVDLSKSLTHWPVTAKRGRASVSSAAASDSGSALEDRLQDAASGELDDEKPEFEMGMKKLKRNKAKKMRIVDLETEEAVAGEARKTTVKQPENCNLYRCSTCGKTFSTHQALGGHRSSHNKGKNIYAVEAQAEAQVKEGESEKERRTLVFDLNELPPLNEEEEAEVAKNGDFNGLLQRS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27877630 27886880 + BLOR02680 Blo10g00890 66086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00890 696 ProSitePatterns Zinc finger C2H2 type domain signature. 408 428 IPR013087 -
Blo10g00890 696 SMART c2h2final6 406 428 IPR013087 -
Blo10g00890 696 SMART c2h2final6 614 636 IPR013087 -
Blo10g00890 696 SMART c2h2final6 449 471 IPR013087 -
Blo10g00890 696 MobiDBLite consensus disorder prediction 250 264 - -
Blo10g00890 696 MobiDBLite consensus disorder prediction 1 48 - -
Blo10g00890 696 SUPERFAMILY HMG-box 252 311 IPR036910 -
Blo10g00890 696 MobiDBLite consensus disorder prediction 1 28 - -
Blo10g00890 696 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 47 310 - -
Blo10g00890 696 SUPERFAMILY ARID-like 68 164 IPR036431 GO:0003677
Blo10g00890 696 SMART bright_3 66 157 IPR001606 GO:0003677
Blo10g00890 696 MobiDBLite consensus disorder prediction 532 568 - -
Blo10g00890 696 Pfam C2H2-type zinc finger 449 473 - -
Blo10g00890 696 Pfam C2H2-type zinc finger 408 428 - -
Blo10g00890 696 Pfam C2H2-type zinc finger 614 638 - -
Blo10g00890 696 CDD HMGB-UBF_HMG-box 264 310 - -
Blo10g00890 696 SUPERFAMILY beta-beta-alpha zinc fingers 449 636 IPR036236 -
Blo10g00890 696 Gene3D Classic Zinc Finger 599 668 - -
Blo10g00890 696 Gene3D High mobility group box domain 258 323 IPR036910 -
Blo10g00890 696 ProSiteProfiles Zinc finger C2H2 type domain profile. 406 433 IPR013087 -
Blo10g00890 696 ProSiteProfiles Zinc finger C2H2 type domain profile. 614 641 IPR013087 -
Blo10g00890 696 MobiDBLite consensus disorder prediction 243 264 - -
Blo10g00890 696 MobiDBLite consensus disorder prediction 676 696 - -
Blo10g00890 696 Gene3D - 52 175 IPR036431 GO:0003677
Blo10g00890 696 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 47 310 - -
Blo10g00890 696 ProSiteProfiles Zinc finger C2H2 type domain profile. 449 471 IPR013087 -
Blo10g00890 696 ProSitePatterns Zinc finger C2H2 type domain signature. 451 471 IPR013087 -
Blo10g00890 696 Gene3D Classic Zinc Finger 407 471 - -
Blo10g00890 696 Pfam ARID/BRIGHT DNA binding domain 69 152 IPR001606 GO:0003677
Blo10g00890 696 SMART ARID_2 62 152 - -
Blo10g00890 696 MobiDBLite consensus disorder prediction 371 397 - -
Blo10g00890 696 ProSitePatterns Zinc finger C2H2 type domain signature. 616 636 IPR013087 -
Blo10g00890 696 CDD ARID_HMGB9-like 68 152 IPR045303 GO:0003677
Blo10g00890 696 ProSiteProfiles ARID domain profile. 65 156 IPR001606 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g00855 Blo10g00890 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00864 Blo-Chr4:9520933 Blo10g00890 Blo-Chr10:27877630 3.75E-06 dispersed
Blo10g00890 Blo-Chr10:27877630 Blo07g00054 Blo-Chr7:773870 4.27E-10 dispersed
Blo01g00329 Blo-Chr1:3990205 Blo10g00890 Blo-Chr10:27877630 3.29E-85 transposed
Blo01g01615 Blo-Chr1:56045650 Blo10g00890 Blo-Chr10:27877630 3.99E-41 transposed
Blo10g00890 Blo-Chr10:27877630 Blo07g00855 Blo-Chr7:26938815 2.95E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12857 PF01388 ARID 2.70E-17 CL0123 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00890 - - qlo:115956027 379.022