Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00890 ATGTCTACCTCTCTTAATCAGCATCTATCTGAGAATCCTATAATTGCTGAGAGCCCTCCACCTACTTCGTCTCATCATCAACAGCGGCAGGAGCTTCTGAGTGAGAGGCCAAATGGGCCATTACCAGTCTCTACCTCCTCAGTCAGCGCCACCAGAACTTACCCTTCTGCTGCTGCTAAGTATGAGGATGTTGCTAAATGTTCGGAGCTTTTCTGGGAAAAGCTCAAGGGTTTTCATGAATCGTTTGGAACTAAATTCTCGGTTCCTACGGTCGGAGGAAAGTCTCTAGATCTACACCGCCTTTTTGTGGAAGTCACCTCTCGAGGTGGCCTGGAAAAGGTTATAAGAGAACGGAAATGGAAGGAACTAGTCGGTGTCTTTAACTTCCCAACGACCATTACAAGTGCATCATTTGTGTTACGGAAGTACTATCTATCATTACTTTATCACTTCGAGCAGGTCTATTACTTCCAAAAACACAACATCGCAATGTCCCCTCCTGCCCAAGACACTGCAAGCAAAAGCCATGAAAATGGATCTATAAATGTGAAGAAAGGCGAGATCATGGCCAAGTTGCAAGATTGTTCAGATCTGCAGCTCGGCTGTTCGGTGACCGGAACCATAGATGGAAAATTCGATAATGGATATCTAATTACTGTCAACATTGGATCGAATCAACTTAAAGGCGTTTTATATCATGTACCTCTCACAGTTTCTCAAAATGGTGCGGCCTTGTCTCCTCGTCGGGGCCGAAAACGATCTAGGCTGGAATTAAGGGATCCGGAACGGCCCAAATCAAACAGGAGTGGATACAACTTCTTCTTCGCTGAGCATTATGCAAGGCTGAAACCTTCCTATCACGGGCAAGAGAGGGCTATTAGCAAGAAAATTGGCATCCTATGGAACAATCTCACCGAGGCCGAAAAGGAGGAACTTTTTATAGCAAATGGAATATCGAGCGCTCAACAAGGCAACCTACACCATCAAGAACAAGTATCCATTTTGATTGCAGACTTTTTCGCCCTAATCAATAAGCGCAAAATACTTCTCGAAGTAGAATCTACGGCTGCCATGGCTAATGACACCTCTGGATTATGCATCAAGCTCCAGTTTCCGAAAAGTTCAAAACCACCTGAAAATCGAGAAGAAGGAAGTGGTGGTGGTGGTGGAGGAGGAGGAGAAGAAGAATCTTCGACAAAATTACGACCTTTTTTCCGATTCTGCATTGTCTGCAACAAGGGGTTCAGCTCCGGCAAAGCTTTGGGCGGCCATATGAGAATGCACGTTCAAGTCAAGAAAAAGGTCGGCGACGAGCTGTGTAATGATGGAGGTCGGAGCGGAAACCATGTTTGTTTTTTGTGCCTGAAGGTTTTCCCGTCGACGAAGTCTCTGTTTGGACATATGCGGTCTCATCCGGAAAGACCGTGGAGGGGAATTCAGCCGCCGCAGGTGGTGAATTGGCACAGCTCGTCGTCTACTCTTTCCGATGTGGACTCGCCGGAGTTTAAATTGGATGATCGTATCGATACAGCTGGTACGACAAGGGCTCCGGCCGTGGACTTGTCGAAGTCTCTTACGCATTGGCCGGTCACGGCTAAAAGAGGCCGGGCAAGCGTTTCTTCAGCTGCAGCTTCTGATTCTGGCTCTGCGTTGGAGGATCGGCTGCAGGACGCTGCTTCTGGTGAATTAGACGATGAAAAACCAGAGTTTGAGATGGGAATGAAAAAGTTAAAGAGAAATAAGGCTAAAAAGATGAGAATAGTTGATTTGGAAACAGAAGAAGCTGTCGCCGGTGAAGCGAGGAAGACAACAGTGAAACAGCCGGAGAACTGTAACCTATACAGATGCAGTACTTGCGGTAAAACATTTTCGACCCACCAAGCTTTGGGTGGCCACAGGTCAAGCCATAACAAAGGGAAGAACATTTACGCCGTTGAAGCTCAGGCTGAAGCTCAAGTGAAAGAAGGAGAAAGTGAGAAAGAAAGGAGAACCTTGGTTTTTGATCTCAACGAGCTTCCACCTCTGAACGAAGAAGAAGAAGCAGAAGTCGCTAAAAATGGCGATTTTAATGGTCTTTTGCAGAGAAGTTAG 2091 46.39 MSTSLNQHLSENPIIAESPPPTSSHHQQRQELLSERPNGPLPVSTSSVSATRTYPSAAAKYEDVAKCSELFWEKLKGFHESFGTKFSVPTVGGKSLDLHRLFVEVTSRGGLEKVIRERKWKELVGVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFQKHNIAMSPPAQDTASKSHENGSINVKKGEIMAKLQDCSDLQLGCSVTGTIDGKFDNGYLITVNIGSNQLKGVLYHVPLTVSQNGAALSPRRGRKRSRLELRDPERPKSNRSGYNFFFAEHYARLKPSYHGQERAISKKIGILWNNLTEAEKEELFIANGISSAQQGNLHHQEQVSILIADFFALINKRKILLEVESTAAMANDTSGLCIKLQFPKSSKPPENREEGSGGGGGGGGEEESSTKLRPFFRFCIVCNKGFSSGKALGGHMRMHVQVKKKVGDELCNDGGRSGNHVCFLCLKVFPSTKSLFGHMRSHPERPWRGIQPPQVVNWHSSSSTLSDVDSPEFKLDDRIDTAGTTRAPAVDLSKSLTHWPVTAKRGRASVSSAAASDSGSALEDRLQDAASGELDDEKPEFEMGMKKLKRNKAKKMRIVDLETEEAVAGEARKTTVKQPENCNLYRCSTCGKTFSTHQALGGHRSSHNKGKNIYAVEAQAEAQVKEGESEKERRTLVFDLNELPPLNEEEEAEVAKNGDFNGLLQRS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27877630 27886880 + BLOR02680 Blo10g00890 66086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00890 696 ProSitePatterns Zinc finger C2H2 type domain signature. 408 428 IPR013087 -
Blo10g00890 696 SMART c2h2final6 406 428 IPR013087 -
Blo10g00890 696 SMART c2h2final6 614 636 IPR013087 -
Blo10g00890 696 SMART c2h2final6 449 471 IPR013087 -
Blo10g00890 696 MobiDBLite consensus disorder prediction 250 264 - -
Blo10g00890 696 MobiDBLite consensus disorder prediction 1 48 - -
Blo10g00890 696 SUPERFAMILY HMG-box 252 311 IPR036910 -
Blo10g00890 696 MobiDBLite consensus disorder prediction 1 28 - -
Blo10g00890 696 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 47 310 - -
Blo10g00890 696 SUPERFAMILY ARID-like 68 164 IPR036431 GO:0003677
Blo10g00890 696 SMART bright_3 66 157 IPR001606 GO:0003677
Blo10g00890 696 MobiDBLite consensus disorder prediction 532 568 - -
Blo10g00890 696 Pfam C2H2-type zinc finger 449 473 - -
Blo10g00890 696 Pfam C2H2-type zinc finger 408 428 - -
Blo10g00890 696 Pfam C2H2-type zinc finger 614 638 - -
Blo10g00890 696 CDD HMGB-UBF_HMG-box 264 310 - -
Blo10g00890 696 SUPERFAMILY beta-beta-alpha zinc fingers 449 636 IPR036236 -
Blo10g00890 696 Gene3D Classic Zinc Finger 599 668 - -
Blo10g00890 696 Gene3D High mobility group box domain 258 323 IPR036910 -
Blo10g00890 696 ProSiteProfiles Zinc finger C2H2 type domain profile. 406 433 IPR013087 -
Blo10g00890 696 ProSiteProfiles Zinc finger C2H2 type domain profile. 614 641 IPR013087 -
Blo10g00890 696 MobiDBLite consensus disorder prediction 243 264 - -
Blo10g00890 696 MobiDBLite consensus disorder prediction 676 696 - -
Blo10g00890 696 Gene3D - 52 175 IPR036431 GO:0003677
Blo10g00890 696 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 47 310 - -
Blo10g00890 696 ProSiteProfiles Zinc finger C2H2 type domain profile. 449 471 IPR013087 -
Blo10g00890 696 ProSitePatterns Zinc finger C2H2 type domain signature. 451 471 IPR013087 -
Blo10g00890 696 Gene3D Classic Zinc Finger 407 471 - -
Blo10g00890 696 Pfam ARID/BRIGHT DNA binding domain 69 152 IPR001606 GO:0003677
Blo10g00890 696 SMART ARID_2 62 152 - -
Blo10g00890 696 MobiDBLite consensus disorder prediction 371 397 - -
Blo10g00890 696 ProSitePatterns Zinc finger C2H2 type domain signature. 616 636 IPR013087 -
Blo10g00890 696 CDD ARID_HMGB9-like 68 152 IPR045303 GO:0003677
Blo10g00890 696 ProSiteProfiles ARID domain profile. 65 156 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00890 - - - qlo:115956027 379.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00855 Blo10g00890 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00864 Blo-Chr4:9520933 Blo10g00890 Blo-Chr10:27877630 3.75E-06 dispersed
Blo10g00890 Blo-Chr10:27877630 Blo07g00054 Blo-Chr7:773870 4.27E-10 dispersed
Blo01g00329 Blo-Chr1:3990205 Blo10g00890 Blo-Chr10:27877630 3.29E-85 transposed
Blo01g01615 Blo-Chr1:56045650 Blo10g00890 Blo-Chr10:27877630 3.99E-41 transposed
Blo10g00890 Blo-Chr10:27877630 Blo07g00855 Blo-Chr7:26938815 2.95E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g786 . . . . Bpe09g00097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00855 Blo10g00890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g00329 . 27 364 ARID Transcription Factor Family AT1G04880 59.5 2.6e-100 362.8
Blo01g01615 . 871 1140 ARID Transcription Factor Family AT1G76110 61.0 1.6e-86 316.6
Blo10g00890 BCT 42 310 ARID Transcription Factor Family AT3G13350 52.3 2.9e-74 275.8
Blo07g00805 CCT,ECH 1 780 ARID Transcription Factor Family AT3G43240 54.8 8.9e-239 823.5
Blo06g00765 CCT,ECH 2 740 ARID Transcription Factor Family AT3G43240 55.8 1.2e-235 813.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016229 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12857 PF01388 ARID 2.70E-17 CL0123 Blo TR