Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00896 ATGGGTCCGTTTGGTTCTCGCAATCACCGTCATCGTCTTCAACACGAAGAAGAAGACGCCATTTCAGATCTGCATTACCAAGCATCCAGGAGGCTGGCAGCGTCGTCGCCGAACGCCACCCACATCCACCACCTGCTCCTCCGATGCGCGCAGCTTATCACTCAAGCTGACTTCTCAGCCGCTCACCGTCTCATCTCCATTTTATCCTCCTACGCCTCCCCCTGCGGCGACTCCACCGAGAGGCTGGTCCACCAGCTCTCCAAAGCCCTTTCTCAACGCCTTGCTGCCTCATCTCCCACAGTGGGCGCTGCCGCCTCTGCTTCGATGCTGATGCTGATGACAATGGACGACGTTGTCCCTTCTACCAATTTCGGCGATGAAAATGCTTACCCGGTTGAGTTTTCGCCCTCATTTTCCGACGAGGCAATTCAGTCCTGCTACCTATCGCTAAATCAAATTACTCCGTTCATTAGATTCAGCCATTTAACAGCAAACCAAGCGATTTTAGAAGCAATTGGGGAAGAACAAAGAGCAATCCACATTCTGGATTTTGAAATAATGCATGGAGTTCAATGGCCGCCTCTCATGCAAGCCTTAGTCGAGCGTTCTAAATTCTACCCACCGCCGATGTTAAGAATCACGGGCACCGGCCGCGACCTCAACTTCCTCTGCAAAACCGGCGATCGTCTCTCCACTTTCGCTCAATCTCTTGGTCTCCAGTTTCAGTTTCAACCGCTTCTCATTCTCAACGATCACGACCACAATCTTCTCATTCCTTCAGCTCTCACACTAAACCCTAACGAAGCTTTAGCCGTCAACTGTGTTTTCTATCTTCACCGGCTTTACAAAGAAGACCTCTCCCTCTTCCTCCATAAAATCAAGTCTCTGAAACCAAAAGTATTCACCATTGCTGAAAGAGAAGCAAATCATAACCACCCCCTTTTTCTACAGAGATTTGTAGAGACTTTGGATCACTACTCCGCCATTTTCGATTCCTTAGAAGCGACACTACCGCCGAGCAGCAGCGAGAGGCTGGCAGTGGAGCAGATGTGGTTTGGGAGAGAGATAATGGACGTGGTGGCGAACGAAGAGACTAACAGAAGGCAAATCAGCCATCAAAGGTATGAATCATGGGAGTTGGTACTTCGAAGCTCAAGCTTTTCTAATCTTCCATTGAGCCCTTTTGCACTTTCTCAGGCTAAATTACTCCTCAGACTCCATTATCCTTCTGAGGGTTATCACCTTCATGTTCACAAAGATTCCTTCTTCCTGGGTTGGCAAAATCGGCCTCTTTTCTCTGTGTCCTCATGGCACTGA 1317 49.13 MGPFGSRNHRHRLQHEEEDAISDLHYQASRRLAASSPNATHIHHLLLRCAQLITQADFSAAHRLISILSSYASPCGDSTERLVHQLSKALSQRLAASSPTVGAAASASMLMLMTMDDVVPSTNFGDENAYPVEFSPSFSDEAIQSCYLSLNQITPFIRFSHLTANQAILEAIGEEQRAIHILDFEIMHGVQWPPLMQALVERSKFYPPPMLRITGTGRDLNFLCKTGDRLSTFAQSLGLQFQFQPLLILNDHDHNLLIPSALTLNPNEALAVNCVFYLHRLYKEDLSLFLHKIKSLKPKVFTIAEREANHNHPLFLQRFVETLDHYSAIFDSLEATLPPSSSERLAVEQMWFGREIMDVVANEETNRRQISHQRYESWELVLRSSSFSNLPLSPFALSQAKLLLRLHYPSEGYHLHVHKDSFFLGWQNRPLFSVSSWH 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27940535 27941851 - BLOR02686 Blo10g00896 66092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00896 438 ProSiteProfiles GRAS family profile. 33 438 IPR005202 -
Blo10g00896 438 PANTHER SCARECROW-LIKE PROTEIN 18 13 438 IPR030017 GO:0005634|GO:0010223
Blo10g00896 438 Pfam GRAS domain family 43 437 IPR005202 -
Blo10g00896 438 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 438 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00896 - - - jre:108992395 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00896 Blo-Chr10:27940535 Blo01g00753 Blo-Chr1:10017385 2.19E-57 dispersed
Blo18g00188 Blo-Chr18:1809599 Blo10g00896 Blo-Chr10:27940535 8.09E-50 dispersed
Blo10g00896 Blo-Chr10:27940535 Blo18g00464 Blo-Chr18:5297705 1.68E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g799 . . . . . . . . Cmo16g01054 . . . . . . . . . . . . . . . Cla10g00339 Cam10g0352 Cec10g0366 Cco10g0360 Clacu10g0353 Cmu10g1189 Cre10g0600 . . . . . Csa03g00359 . Cme06g02676 . Blo10g00896 . . . . . . Sed08g2851 . . . . . . Cpe14g00831 . Bhi11g00376 Tan01g1930 Cmetu06g2650 . Hepe06g1220 Mch10g1457 . . . . . . . . . . Chy06g01964 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00319 . 45 745 GRAS Transcription Factor Family AT2G37650 51.9 1.4e-198 689.9
Blo09g00319 . 289 746 GRAS Transcription Factor Family AT3G46600 50.7 8.3e-125 444.5
Blo16g00358 . 36 452 GRAS Transcription Factor Family AT3G49950 61.7 5.2e-140 494.6
Blo04g00926 . 117 569 GRAS Transcription Factor Family AT4G36710 54.2 5.2e-131 464.9
Blo07g00834 . 55 453 GRAS Transcription Factor Family AT5G41920 65.3 7.9e-141 497.3
Blo10g00907 . 1 169 GRAS Transcription Factor Family AT5G41920 58.2 5.3e-44 175.6
Blo05g00794 . 1 612 GRAS Transcription Factor Family AT5G66770 58.4 1.9e-183 639.4
Blo10g00862 . 18 508 GRAS Transcription Factor Family AT1G50600 58.2 4.6e-165 578.2
Blo02g00135 BCT 92 513 GRAS Transcription Factor Family AT1G50600 63.7 7.8e-157 550.8
Blo15g00454 BCT 88 510 GRAS Transcription Factor Family AT1G50600 60.5 4.7e-146 515.0
Blo13g01002 . 108 546 GRAS Transcription Factor Family AT1G50600 57.3 1.3e-140 496.9
Blo14g00035 . 103 542 GRAS Transcription Factor Family AT1G50600 56.7 6.2e-138 488.0
Blo03g00589 . 201 572 GRAS Transcription Factor Family AT1G50600 62.6 1.4e-134 476.9
Blo01g01323 CCT,ECH 210 579 GRAS Transcription Factor Family AT1G50600 50.8 2.2e-103 373.2
Blo17g00226 CCT,ECH 1 338 GRAS Transcription Factor Family AT1G50600 53.8 3.2e-102 369.4
Blo16g00714 . 33 572 GRAS Transcription Factor Family AT1G14920 65.7 2.9e-199 691.8
Blo01g00753 . 17 559 GRAS Transcription Factor Family AT1G14920 65.0 1.1e-193 673.3
Blo17g00458 . 47 580 GRAS Transcription Factor Family AT1G14920 62.4 3.2e-190 661.8
Blo18g00464 . 46 585 GRAS Transcription Factor Family AT1G14920 60.4 2.7e-181 632.1
Blo10g00896 . 42 437 GRAS Transcription Factor Family AT1G55580 53.6 1.2e-105 380.6
Blo17g00458 . 42 577 GRAS Transcription Factor Family AT1G66350 63.9 1.2e-186 649.8
Blo18g00464 . 41 586 GRAS Transcription Factor Family AT1G66350 61.2 1.1e-179 626.7
Blo16g00714 . 19 573 GRAS Transcription Factor Family AT1G66350 55.9 2.1e-167 585.9
Blo01g00753 . 3 560 GRAS Transcription Factor Family AT1G66350 55.0 3.0e-161 565.5
Blo13g01071 . 237 786 GRAS Transcription Factor Family AT1G07520 51.6 1.0e-151 533.9
Blo02g00135 BCT 5 513 GRAS Transcription Factor Family AT5G48150 62.1 1.7e-177 619.4
Blo15g00454 BCT 5 510 GRAS Transcription Factor Family AT5G48150 61.1 2.1e-172 602.4
Blo10g00862 . 33 508 GRAS Transcription Factor Family AT5G48150 60.6 4.3e-165 578.2
Blo13g01002 . 57 546 GRAS Transcription Factor Family AT5G48150 56.7 3.5e-151 531.9
Blo14g00035 . 12 542 GRAS Transcription Factor Family AT5G48150 52.7 1.6e-143 506.5
Blo03g00589 . 79 572 GRAS Transcription Factor Family AT5G48150 53.9 4.7e-140 495.0
Blo01g01323 CCT,ECH 188 579 GRAS Transcription Factor Family AT5G48150 52.5 4.5e-114 408.7
Blo17g00226 CCT,ECH 1 338 GRAS Transcription Factor Family AT5G48150 57.2 1.9e-109 393.3
Blo16g00714 . 35 577 GRAS Transcription Factor Family AT2G01570 66.3 5.0e-205 711.1
Blo01g00753 . 19 559 GRAS Transcription Factor Family AT2G01570 65.5 8.6e-197 683.7
Blo17g00458 . 49 579 GRAS Transcription Factor Family AT2G01570 63.1 1.4e-191 666.4
Blo18g00464 . 48 583 GRAS Transcription Factor Family AT2G01570 60.0 3.3e-180 628.6
Blo17g00458 . 42 577 GRAS Transcription Factor Family AT1G66350 63.9 1.2e-186 649.8
Blo18g00464 . 41 586 GRAS Transcription Factor Family AT1G66350 61.2 1.1e-179 626.7
Blo16g00714 . 19 573 GRAS Transcription Factor Family AT1G66350 55.9 2.1e-167 585.9
Blo01g00753 . 3 560 GRAS Transcription Factor Family AT1G66350 55.0 3.0e-161 565.5
Blo17g00458 . 49 578 GRAS Transcription Factor Family AT3G03450 63.3 2.4e-185 645.6
Blo18g00464 . 48 583 GRAS Transcription Factor Family AT3G03450 61.7 8.6e-183 637.1
Blo16g00714 . 35 572 GRAS Transcription Factor Family AT3G03450 59.1 4.2e-169 591.7
Blo01g00753 . 19 559 GRAS Transcription Factor Family AT3G03450 57.8 5.3e-164 574.7
Blo17g00458 . 48 578 GRAS Transcription Factor Family AT5G17490 60.0 1.5e-163 573.2
Blo18g00464 . 47 584 GRAS Transcription Factor Family AT5G17490 58.0 5.2e-161 564.7
Blo16g00714 . 31 570 GRAS Transcription Factor Family AT5G17490 53.0 6.6e-148 521.2
Blo01g00753 . 15 559 GRAS Transcription Factor Family AT5G17490 52.3 1.7e-143 506.5
Blo01g01323 CCT,ECH 1 579 GRAS Transcription Factor Family AT1G21450 59.5 1.9e-180 629.4
Blo17g00226 CCT,ECH 1 334 GRAS Transcription Factor Family AT1G21450 73.1 6.1e-142 501.5
Blo02g00135 BCT 138 513 GRAS Transcription Factor Family AT1G21450 51.7 3.5e-113 406.0
Blo15g00454 BCT 136 510 GRAS Transcription Factor Family AT1G21450 51.2 1.4e-109 394.0
Blo03g00589 . 204 572 GRAS Transcription Factor Family AT1G21450 52.4 9.9e-108 387.9
Blo09g00319 . 350 746 GRAS Transcription Factor Family AT5G59450 53.3 3.5e-124 442.6
Blo14g00035 . 1 542 GRAS Transcription Factor Family AT4G17230 60.8 2.3e-177 619.0
Blo13g01002 . 1 546 GRAS Transcription Factor Family AT4G17230 56.8 3.8e-167 585.1
Blo02g00135 BCT 16 513 GRAS Transcription Factor Family AT4G17230 50.3 8.5e-135 477.6
Blo15g00454 BCT 16 510 GRAS Transcription Factor Family AT4G17230 50.5 6.5e-127 451.4
Blo15g00454 BCT 132 510 GRAS Transcription Factor Family AT2G04890 69.4 2.7e-152 535.4
Blo02g00135 BCT 126 513 GRAS Transcription Factor Family AT2G04890 64.9 2.8e-149 525.4
Blo10g00862 . 98 508 GRAS Transcription Factor Family AT2G04890 60.6 2.9e-146 515.4
Blo13g01002 . 166 546 GRAS Transcription Factor Family AT2G04890 61.4 1.2e-128 456.8
Blo03g00589 . 195 572 GRAS Transcription Factor Family AT2G04890 59.0 7.8e-128 454.1
Blo14g00035 . 153 542 GRAS Transcription Factor Family AT2G04890 58.1 8.1e-125 444.1
Blo01g01323 CCT,ECH 210 579 GRAS Transcription Factor Family AT2G04890 50.5 5.1e-103 371.7
Blo17g00226 CCT,ECH 1 338 GRAS Transcription Factor Family AT2G04890 52.9 5.3e-100 361.7
Blo03g00972 . 817 1275 GRAS Transcription Factor Family AT1G50420 65.9 2.8e-169 592.0
Blo04g00411 . 1 464 GRAS Transcription Factor Family AT1G50420 59.0 8.8e-155 543.9
Blo07g00834 . 86 451 GRAS Transcription Factor Family AT3G54220 62.0 5.0e-129 458.8
Blo05g00280 . 147 518 GRAS Transcription Factor Family AT3G54220 51.8 1.2e-106 384.4
Blo10g00907 . 3 165 GRAS Transcription Factor Family AT3G54220 57.6 1.4e-46 184.9
Blo06g00014 . 90 481 GRAS Transcription Factor Family AT4G37650 67.2 9.6e-155 543.9
Blo05g00836 . 1 482 GRAS Transcription Factor Family AT4G37650 54.8 2.6e-152 535.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008597 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12859 PF03514 GRAS 8.50E-116 CL0063 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00896 Blo_Chr10 FPKM 17.029589 19.041 17.829176 17.750954 16.022781 13.715486 15.072526 25.151703 22.308989 23.838835