Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00929 ATGCGCCCGGCTACTTTTTTGTTGTGGATTTTATTGGTGGTGCTTCTGGGGGTTCCAGTTAAATCAAAAACGGACGCGCCAGATGTCTCTGCGCTTAATGTGATGTTTACTAGTTTGAATTCTCCCTCACAATTGCCTGGGTGGAAATCTAGTGGAGGTGATCCCTGTGATGAATCATGGGAAGGAATCAAATGCTCAGGCTCGTCAGTGACTGAAATAAGTTTATCCGACTTCGGACTTAGTGGATCGATGGGATACCAGCTATCAAGTTTGACATCTGTCACCTATTTTGATTTAAGCAAGAACAACCTCGGGGGAGATATTCCATATCAACTTCCACCCAATGCAATTCACATAGATCTTTCAGAGAATAGCTTCACGGGTAGTGTACCTTATTCCATTTCTCAGATGGCTGATCTTGAATCCTTGGATCTCTCGCACAATTCTTTGTCAGGAAATTTGCCTCAAAGTTTTAAGAAACTCTCAAGTCTTACCTCCCTGTATTTAGAGGACAATCAATTTTCTGGTACAATCAATGTTCTTGCGAGCCTCTCTCTTGACACCTTCTGTAAGTTGACATCTTGCTCTTGCAATATTGTTTCGTTGACAGGAATATTGAAGACAACCAGTTTACTGGCTGGATTCCTGACGAGTACTGGTGGAAATTCATGGTCAACTGGACCAGCTCCTCCTCCTCCACCTGGTGGACAAGTCCATGATAACAATGAGTCGGATAGGAAGGATGCTGGGAAGTCAGTTTTGAGTGCACTAGTGATAACCAGTGTAGCTTTGGGCGTTTTAGTGATCCTTGTAATTGGAATTGCTGTTTTTTCAAGACGATCGTCTTCACCTTCAATACATTTTCTCGATGAGGAGGCAGAACGAAGATCTTTTACTCCTCTTACATCTCAGGAGTTGCCATCAAACTTCCGTCCTGATAAACCAAAAAACTTCGAAGAGCTCAAATCATTTAACTCATCTGCCTCTATTGATGCTAAGACTTTGCAAAAATCTCCTTCGATTGGCAATAAGCACTCAACTTCTGATCGTAGACAGTCCTTTACTGATAGTGAATTTGCAAACCGACTAAATGCGAGAAGAAGTATTTCAGCTTCTGCTACAAGTTATTCTTTGGCAGATTTGCAGACTGCCACTGCTAATTTTGCTACAGGCCGTCTTCTTGGTGAGGGTTCCATTGGACGTGTTTATAGAGCTAAATATGCTGATGGAAAGGTTACAGCTGTGAAAAAAATAGAGTCATCTCTTTTTCAAGGACGGCAGCCGGAAGAATTTTCTGAGATTGTAGCTAACATGGAGAAACTTCACCACCCAAACATTGCAGAGCTTTTAGGATATTGTTCAGAACAAGGGCATCACATGTTAATCTTTGATTATTTCAGGAACGGCTCCCTTCATGAATACTTGCACATGTCAGATGACTTTAGCAAACCACTAACTTGGAATACTAGAGTTAGAATCGCCTTGGGAATGGCGAGGGCCATTGAGTACCTCCATGAGGTGTGTTCACCGTCTTTAATTCACAAGAACATAAAGTCGTCTAATATTCTGCTGGACACTGAGCTCAATCCCCATCTCTCTGACTGTGGATTGGCAACTTTCTATGAGCGTACTAGCAAAAATCTGGAAGTTGGGTATTGTGCCCCTGAGTGCAATGAGCCATCGGCTTATACATTGAAGAGTGATGTGTACAGTTTTGGAGTGGTGATGTTGGAGTTGTTGACGGGTCGAATGCCTTTTGATAGTTCAAAAGCAAAGCCAGAACAGTGCCTGGTCTGGTGGGCAAGCCCACAGCTCCATGACATTGATGCTTTGGCAAAAATGGTCGACCCTGCATTGCGCGGATTGTACCCTCCCAAATCGGTATCTCGGTTTGCTGATATCATTGCCCTCTGCGTACAGTCTGAGCCTGAATTTAGGCCTCCAATGTCAGAGGTGGTGCAAGCATTGGTCCGGGTAGTTCAACGGTCGAGCATGACAATGAGGGATGATCTCGGAGCAAGCTTCTCGTCGGACGGATGA 2040 43.82 MRPATFLLWILLVVLLGVPVKSKTDAPDVSALNVMFTSLNSPSQLPGWKSSGGDPCDESWEGIKCSGSSVTEISLSDFGLSGSMGYQLSSLTSVTYFDLSKNNLGGDIPYQLPPNAIHIDLSENSFTGSVPYSISQMADLESLDLSHNSLSGNLPQSFKKLSSLTSLYLEDNQFSGTINVLASLSLDTFCKLTSCSCNIVSLTGILKTTSLLAGFLTSTGGNSWSTGPAPPPPPGGQVHDNNESDRKDAGKSVLSALVITSVALGVLVILVIGIAVFSRRSSSPSIHFLDEEAERRSFTPLTSQELPSNFRPDKPKNFEELKSFNSSASIDAKTLQKSPSIGNKHSTSDRRQSFTDSEFANRLNARRSISASATSYSLADLQTATANFATGRLLGEGSIGRVYRAKYADGKVTAVKKIESSLFQGRQPEEFSEIVANMEKLHHPNIAELLGYCSEQGHHMLIFDYFRNGSLHEYLHMSDDFSKPLTWNTRVRIALGMARAIEYLHEVCSPSLIHKNIKSSNILLDTELNPHLSDCGLATFYERTSKNLEVGYCAPECNEPSAYTLKSDVYSFGVVMLELLTGRMPFDSSKAKPEQCLVWWASPQLHDIDALAKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVRVVQRSSMTMRDDLGASFSSDG 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28355908 28361762 + BLOR02719 Blo10g00929 66125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00929 679 Gene3D Transferase(Phosphotransferase) domain 1 466 674 - -
Blo10g00929 679 MobiDBLite consensus disorder prediction 223 247 - -
Blo10g00929 679 SUPERFAMILY L domain-like 26 204 - -
Blo10g00929 679 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Blo10g00929 679 Pfam Protein tyrosine and serine/threonine kinase 390 656 IPR001245 GO:0004672|GO:0006468
Blo10g00929 679 MobiDBLite consensus disorder prediction 332 348 - -
Blo10g00929 679 MobiDBLite consensus disorder prediction 332 355 - -
Blo10g00929 679 Gene3D Ribonuclease Inhibitor 26 222 IPR032675 -
Blo10g00929 679 ProSiteProfiles Protein kinase domain profile. 388 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo10g00929 679 SUPERFAMILY Protein kinase-like (PK-like) 369 656 IPR011009 -
Blo10g00929 679 Gene3D Phosphorylase Kinase; domain 1 349 465 - -
Blo10g00929 679 PANTHER OS01G0253100 PROTEIN 19 676 IPR045271 GO:0004714|GO:0006468
Blo10g00929 679 Pfam Leucine rich repeat 119 174 IPR001611 GO:0005515
Blo10g00929 679 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00929 - - - jre:109004269 871.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00929 Blo-Chr10:28355908 Blo10g00947 Blo-Chr10:28553228 5.84E-176 dispersed
Blo10g00929 Blo-Chr10:28355908 Blo07g00813 Blo-Chr7:26124914 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0869 . . . . . . . Blo10g00929 . . . Bpe09g00067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00549 . 31 753 Strubbelig Receptor Gene Family AT4G03390 62.9 6.2e-211 731.1
Blo02g00087 . 39 765 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-180 629.8
Blo07g00813 . 365 657 Strubbelig Receptor Gene Family AT4G03390 57.7 3.1e-93 340.1
Blo14g00015 . 95 385 Strubbelig Receptor Gene Family AT4G03390 58.5 1.5e-92 337.8
Blo09g00427 . 113 787 Strubbelig Receptor Gene Family AT5G06820 51.2 1.4e-164 577.0
Blo10g00929 . 21 677 Strubbelig Receptor Gene Family AT1G78980 59.5 8.1e-186 647.5
Blo05g00016 CCT 251 556 Strubbelig Receptor Gene Family AT1G78980 60.9 9.5e-102 368.2
Blo14g00015 . 92 399 Strubbelig Receptor Gene Family AT1G78980 54.3 2.0e-91 334.0
Blo15g00549 . 27 627 Strubbelig Receptor Gene Family AT2G20850 51.0 9.1e-131 464.5
Blo14g00015 . 91 259 Strubbelig Receptor Gene Family AT2G20850 56.8 2.5e-51 200.7
Blo10g00929 . 20 660 Strubbelig Receptor Gene Family AT3G13065 50.3 7.3e-139 491.5
Blo05g00016 CCT 248 539 Strubbelig Receptor Gene Family AT3G13065 59.7 1.4e-97 354.4
Blo14g00015 . 94 382 Strubbelig Receptor Gene Family AT3G13065 51.5 4.8e-82 302.8
Blo13g00991 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 3.0e-84 310.1
Blo10g00947 CCT 1604 1898 Strubbelig Receptor Gene Family AT1G11130 52.0 2.0e-83 307.4
Blo07g00813 . 369 651 Strubbelig Receptor Gene Family AT1G11130 51.6 7.0e-81 298.9
Blo14g00015 . 86 382 Strubbelig Receptor Gene Family AT1G11130 51.5 5.9e-80 295.8
Blo15g00549 . 27 627 Strubbelig Receptor Gene Family AT2G20850 51.0 9.1e-131 464.5
Blo14g00015 . 91 259 Strubbelig Receptor Gene Family AT2G20850 56.8 2.5e-51 200.7
Blo09g00427 . 113 787 Strubbelig Receptor Gene Family AT5G06820 51.2 1.4e-164 577.0
Blo15g00549 . 31 753 Strubbelig Receptor Gene Family AT4G03390 62.9 6.2e-211 731.1
Blo02g00087 . 39 765 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-180 629.8
Blo07g00813 . 365 657 Strubbelig Receptor Gene Family AT4G03390 57.7 3.1e-93 340.1
Blo14g00015 . 95 385 Strubbelig Receptor Gene Family AT4G03390 58.5 1.5e-92 337.8
Blo10g00929 . 20 660 Strubbelig Receptor Gene Family AT3G13065 50.3 7.3e-139 491.5
Blo05g00016 CCT 248 539 Strubbelig Receptor Gene Family AT3G13065 59.7 1.4e-97 354.4
Blo14g00015 . 94 382 Strubbelig Receptor Gene Family AT3G13065 51.5 4.8e-82 302.8
Blo10g00929 . 21 677 Strubbelig Receptor Gene Family AT1G78980 59.5 8.1e-186 647.5
Blo05g00016 CCT 251 556 Strubbelig Receptor Gene Family AT1G78980 60.9 9.5e-102 368.2
Blo14g00015 . 92 399 Strubbelig Receptor Gene Family AT1G78980 54.3 2.0e-91 334.0
Blo10g00947 CCT 1224 1913 Strubbelig Receptor Gene Family AT1G53730 59.2 2.1e-192 669.5
Blo07g00813 . 1 666 Strubbelig Receptor Gene Family AT1G53730 59.8 1.3e-178 623.6
Blo05g00016 CCT 169 550 Strubbelig Receptor Gene Family AT1G53730 72.1 6.7e-151 531.6
Blo13g00991 . 50 677 Strubbelig Receptor Gene Family AT1G53730 50.3 2.6e-142 503.1
Blo14g00015 . 68 385 Strubbelig Receptor Gene Family AT1G53730 58.9 1.2e-102 371.3
Blo10g00947 CCT 1236 1918 Strubbelig Receptor Gene Family AT3G14350 59.2 1.7e-180 629.8
Blo05g00016 CCT 169 550 Strubbelig Receptor Gene Family AT3G14350 63.8 9.3e-126 448.0
Blo14g00015 . 89 385 Strubbelig Receptor Gene Family AT3G14350 56.9 1.5e-86 317.8
Blo13g00991 . 147 685 Strubbelig Receptor Gene Family AT4G22130 61.4 5.8e-174 607.8
Blo14g00015 . 55 407 Strubbelig Receptor Gene Family AT4G22130 72.1 5.4e-148 521.5
Blo10g00947 CCT 1610 1929 Strubbelig Receptor Gene Family AT4G22130 61.7 3.9e-114 409.1
Blo05g00016 CCT 245 565 Strubbelig Receptor Gene Family AT4G22130 62.3 6.7e-114 408.3
Blo07g00813 . 347 670 Strubbelig Receptor Gene Family AT4G22130 62.5 1.1e-113 407.5
Blo10g00929 . 346 675 Strubbelig Receptor Gene Family AT4G22130 54.4 3.1e-103 372.9
Blo15g00549 . 440 745 Strubbelig Receptor Gene Family AT4G22130 57.7 1.1e-97 354.4
Blo02g00087 . 472 765 Strubbelig Receptor Gene Family AT4G22130 54.9 2.0e-89 327.0
Blo11g00301 . 439 721 Strubbelig Receptor Gene Family AT4G22130 58.2 1.7e-88 323.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84507 PF07714 PK_Tyr_Ser-Thr 1.10E-44 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo10g00929 Blo_Chr10 FPKM 3.736979 5.475904 3.151971 5.70612 2.801255 1.884078 1.775595 3.85396 4.018672 4.430923