Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo10g00956 ATGGACTCCATCAACTCCTTCAAGGGCTACGGTAAGGTGGACGATGCTGAAGCGAGAGATTTCCGCCGGAAAACTCGCCGGCGTCTTATCATTCTTGTGGTTTCTGTCGTCGTCCTGATTGCTTTAATCGTCGGGGTAGTCGCCGGCACCGTGATTCACAAGCGGAGAAGTTCGACTTCTTCGCCCTCAATGCAGCTAACTCCGGCTGCTTCGATTAAAACTATTTGCAGCGTGACGCAGTATCCAGCCTCTTGTATGTCTTCACTCAAGGGCTCGAATACCACCGACCCGGAAGCTCTCTTCAAGTTTTCTCTCCGAGTCGCCATTACCGAGCTCTCCAAGCTCTCTCAGTACCCCACAAAGTTCAGCACCAACGATGGCAAGCTCAACGAGACCTTGTGGCTCTGTCGCGCGCTTTTCGAAGACGCCGTCGACAGACTCAACGACTCTATTTCAGCCATGGATGTGGGCGAAGGAGGGAGGATTTTGTCCGAGTCCAAGATCAACGACTTGAGAACATGGCTCAGCGCCACCATTACCGACCAGGAAACCTGCTTGGACGCTCTTCAAGATCTGAACTCCACTCTCGTAAACGACTTCAGAAATGCGATGGAAAACTCCACCGAGTTTTTTCGTTACAATGGCCACATTGTAACGAAAATCCTCGGTCTGTTGAGCGATTTCAACATTCCGATACACCGGAGGTTGCTCGGATTCAAAGGATCGGACTCAAACTTTCCAGATTGGGTGAGCGCCGGAGATCGGAGGCTGCTGCAAGCGGAGAATGTGGTGCCGAACGTGACGGTGGCGTTGGACGGGAGCGGAAACTACACGACGATCTCCGATGCGGTGAATGCCGTGCCAAAAAAGAGTACGGTGAGATTTGTTATATATGTGAAGGAAGGAACATACCAAGAGACTGTGAGATTGGATAAGAACACATGGAACGTTATGATGATCGGAGACGGAAATACTAAGACCATTGTTTCCGGCAGCCTGAACTTTGTCGACGGGACTCCCACTTTCTCCACCGCTACTTTTGGTAATTCGTTTTATCTTCTTCTTCACTTAATAAGTTTATTGCTTTCTTCATGTGCTACTGCATTTCTTCCTGGCCTGGCCATGGAAGCCACTCTTTTCTTCTGA 1146 50.0 MDSINSFKGYGKVDDAEARDFRRKTRRRLIILVVSVVVLIALIVGVVAGTVIHKRRSSTSSPSMQLTPAASIKTICSVTQYPASCMSSLKGSNTTDPEALFKFSLRVAITELSKLSQYPTKFSTNDGKLNETLWLCRALFEDAVDRLNDSISAMDVGEGGRILSESKINDLRTWLSATITDQETCLDALQDLNSTLVNDFRNAMENSTEFFRYNGHIVTKILGLLSDFNIPIHRRLLGFKGSDSNFPDWVSAGDRRLLQAENVVPNVTVALDGSGNYTTISDAVNAVPKKSTVRFVIYVKEGTYQETVRLDKNTWNVMMIGDGNTKTIVSGSLNFVDGTPTFSTATFGNSFYLLLHLISLLLSSCATAFLPGLAMEATLFF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28639247 28640392 + BLOR02746 Blo10g00956 66152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo10g00956 381 CDD PMEI-like_3 74 210 - -
Blo10g00956 381 Gene3D - 263 354 IPR012334 -
Blo10g00956 381 TIGRFAM PME_inhib: pectinesterase inhibitor domain 58 208 IPR006501 GO:0004857
Blo10g00956 381 ProSitePatterns Pectinesterase signature 1. 291 310 IPR018040 -
Blo10g00956 381 PANTHER PECTINESTERASE 8 348 - -
Blo10g00956 381 SMART PMEI_2 67 217 IPR006501 GO:0004857
Blo10g00956 381 PANTHER PECTINESTERASE 1-RELATED 8 348 - -
Blo10g00956 381 SUPERFAMILY Pectin lyase-like 266 348 IPR011050 -
Blo10g00956 381 Pfam Pectinesterase 266 349 IPR000070 GO:0030599|GO:0042545
Blo10g00956 381 Pfam Plant invertase/pectin methylesterase inhibitor 71 202 IPR006501 GO:0004857
Blo10g00956 381 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 221 IPR035513 -
Blo10g00956 381 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 220 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01222 Blo-Chr6:35821740 Blo10g00956 Blo-Chr10:28639247 4.00E-40 dispersed
Blo10g00956 Blo-Chr10:28639247 Blo11g00207 Blo-Chr11:1679936 4.69E-66 dispersed
Blo10g00956 Blo-Chr10:28639247 Blo07g00808 Blo-Chr7:25954790 4.01E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo10g00956 - - pavi:110761660 424.476