Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo11g00002 | ATGGGGAGGGGGAAGATCGTGATTAGGAGAATCGATAACTCGACGAACAGGCAAGTTACCTTCTCGAAGCGAAGGAATGGATTGTTGAAAAAGGCGAAGGAGCTCGCAATCCTATGCGACGCGGAAGTAGGCGTGGTAATCTTCTCCGGCACAGGCAAGCTCTACGATTTCGCAAGTACAAGCATGAAATCGGTAATTGATCGATACAATAAAACGAAAGATGGATGTCAACAACATGGGAATCCAACCTCTGACGTCAAGTTCTGGCAAAGAGAAGCAGCAATATTGCGACAGCAACTGCAAGACTTACAAAAGAGTTACAGGCAAATGAGAGGTGAAGACCTTTCTGGTTTGAGTGTCAAAGATTTACAGAATCTGGAATATCATTTGGAAACTAGTCTTGGTAGCGTTCGGATGAAGAAGGAAAAGATCTTAATGGATGAAATTCAAGACCTAAATCAAAAGCTCTATGGAAAAACTGGAGGGAAGAAATATTCATTTCTCAAAAATAGCCAAGGATCTGTCGACTCTTATGTACCTGTGAACCTTCAGCTTAGCCAGCCAAAGCAACACGACAACGACGATGAAGCAAGCGTAACAAAGTTGGGCAATTTTCAAGAACCAGATCAGAGGGAAAATCAGGAACAAGAAGATTCGTTAATGGAGATGACCGAGCTTGTTCAAGACCCAGAAATGGAGCAACAAGAGGAAGACGATCAATACTTAATTGATCCTTCTGATTCTCGTTTATTAATTTCCCACCTGCACCCCCATCGCCACCCTCTTTCCTCCTCCTGCGGCTGTAACGACGGTGCTTCCGTCTCTAACCGGATGAAAAGACGCTCCATTTCGCCTTCTTTCTTGTCTTCTCTGCAAGACGCAGAACCCAAATTCAAGAAGCTTTTTCTTGATAAAGATGAGAACGTTTCGTTCGGTGGCTACTCCAAGATTTCCCTTCCTTGCTCTTTCGGAGCTTCCCCCTCTGGTCCTTCTCGGGCCGGAAATCCGACGCTGACTCATATGGTTCCCTCTCTTCGCCAGAGTGTTTCCGACCCTTGCAATGCTATTGCAATCATTAATGGTGGGAAATCAGCAGCTCCCCAGTCAGAAGAAGGGCCAGTTTCAATATCGGCCTTGCCGCCTCACCCGCAGAGTCTTCGCCGGACAGTTTCAGATCCAAGTCCATCTCCGGCAAAAACTTTCTCTCAGTCGCCGGCCAAGGCTAACAAAGACATCAAATCAATCAAAGAAGAGAGCCCTGATTCAACGAGATTGAAAAGGATAAAAGAGCGTTTGAGGGAGGTGAATCAATGGTGGAATGAAGTGATGCAAGAACAAGAAGAACAAGCAGAAGAAGACGAAGGATTTGTATACAGCAACAATGGCGATACAGAGGAAAAATGTGAAGCAAAAATCGAAGAAACTGTTGAAGTAGAAAGGGTGGAGGAGTCATTAATCCTTCGTTTCAAGTGTCCCTGTAGTAAAGTATACAAAATCCTTCTCGCCGGAAATAGCTGTTTCTACAAACTAGTGTAG | 1536 | 44.86 | MGRGKIVIRRIDNSTNRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSGTGKLYDFASTSMKSVIDRYNKTKDGCQQHGNPTSDVKFWQREAAILRQQLQDLQKSYRQMRGEDLSGLSVKDLQNLEYHLETSLGSVRMKKEKILMDEIQDLNQKLYGKTGGKKYSFLKNSQGSVDSYVPVNLQLSQPKQHDNDDEASVTKLGNFQEPDQRENQEQEDSLMEMTELVQDPEMEQQEEDDQYLIDPSDSRLLISHLHPHRHPLSSSCGCNDGASVSNRMKRRSISPSFLSSLQDAEPKFKKLFLDKDENVSFGGYSKISLPCSFGASPSGPSRAGNPTLTHMVPSLRQSVSDPCNAIAIINGGKSAAPQSEEGPVSISALPPHPQSLRRTVSDPSPSPAKTFSQSPAKANKDIKSIKEESPDSTRLKRIKERLREVNQWWNEVMQEQEEQAEEDEGFVYSNNGDTEEKCEAKIEETVEVERVEESLILRFKCPCSKVYKILLAGNSCFYKLV | 511 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10151 | 24737 | - | BLOR02878 | Blo11g00002 | 66202 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo11g00002 | 511 | SUPERFAMILY | SRF-like | 2 | 74 | IPR036879 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | Pfam | K-box region | 83 | 155 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Blo11g00002 | 511 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | ProSiteProfiles | K-box domain profile. | 86 | 196 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Blo11g00002 | 511 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 | 1 | 155 | - | - | |
Blo11g00002 | 511 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | Coils | Coil | 429 | 449 | - | - | |
Blo11g00002 | 511 | MobiDBLite | consensus disorder prediction | 364 | 422 | - | - | |
Blo11g00002 | 511 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 155 | - | - | |
Blo11g00002 | 511 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Blo11g00002 | 511 | Coils | Coil | 86 | 113 | - | - | |
Blo11g00002 | 511 | MobiDBLite | consensus disorder prediction | 382 | 409 | - | - | |
Blo11g00002 | 511 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Blo11g00002 | 511 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo05g00818 | Blo-Chr5:29833204 | Blo11g00002 | Blo-Chr11:10151 | 6.01E-29 | dispersed | |
Blo10g00112 | Blo-Chr10:1208636 | Blo11g00002 | Blo-Chr11:10151 | 1.42E-41 | dispersed | |
Blo11g00002 | Blo-Chr11:10151 | Blo14g00857 | Blo-Chr14:31482245 | 1.66E-41 | dispersed | |
Blo17g00092 | Blo-Chr17:714384 | Blo11g00002 | Blo-Chr11:10151 | 4.71E-28 | dispersed | |
Blo01g00888 | Blo-Chr1:17763511 | Blo11g00002 | Blo-Chr11:10151 | 1.39E-35 | transposed | |
Blo02g00050 | Blo-Chr2:319832 | Blo11g00002 | Blo-Chr11:10151 | 1.59E-40 | transposed | |
Blo11g00002 | Blo-Chr11:10151 | Blo17g00091 | Blo-Chr17:696120 | 2.43E-11 | wgd | |
Blo11g00002 | Blo-Chr11:10151 | Blo18g00105 | Blo-Chr18:971128 | 8.46E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
12869 | PF01486 | K-box | 4.30E-22 | No_clan | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo11g00002 | K09264 | - | tcc:18591843 | 273.863 |