Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00002 ATGGGGAGGGGGAAGATCGTGATTAGGAGAATCGATAACTCGACGAACAGGCAAGTTACCTTCTCGAAGCGAAGGAATGGATTGTTGAAAAAGGCGAAGGAGCTCGCAATCCTATGCGACGCGGAAGTAGGCGTGGTAATCTTCTCCGGCACAGGCAAGCTCTACGATTTCGCAAGTACAAGCATGAAATCGGTAATTGATCGATACAATAAAACGAAAGATGGATGTCAACAACATGGGAATCCAACCTCTGACGTCAAGTTCTGGCAAAGAGAAGCAGCAATATTGCGACAGCAACTGCAAGACTTACAAAAGAGTTACAGGCAAATGAGAGGTGAAGACCTTTCTGGTTTGAGTGTCAAAGATTTACAGAATCTGGAATATCATTTGGAAACTAGTCTTGGTAGCGTTCGGATGAAGAAGGAAAAGATCTTAATGGATGAAATTCAAGACCTAAATCAAAAGCTCTATGGAAAAACTGGAGGGAAGAAATATTCATTTCTCAAAAATAGCCAAGGATCTGTCGACTCTTATGTACCTGTGAACCTTCAGCTTAGCCAGCCAAAGCAACACGACAACGACGATGAAGCAAGCGTAACAAAGTTGGGCAATTTTCAAGAACCAGATCAGAGGGAAAATCAGGAACAAGAAGATTCGTTAATGGAGATGACCGAGCTTGTTCAAGACCCAGAAATGGAGCAACAAGAGGAAGACGATCAATACTTAATTGATCCTTCTGATTCTCGTTTATTAATTTCCCACCTGCACCCCCATCGCCACCCTCTTTCCTCCTCCTGCGGCTGTAACGACGGTGCTTCCGTCTCTAACCGGATGAAAAGACGCTCCATTTCGCCTTCTTTCTTGTCTTCTCTGCAAGACGCAGAACCCAAATTCAAGAAGCTTTTTCTTGATAAAGATGAGAACGTTTCGTTCGGTGGCTACTCCAAGATTTCCCTTCCTTGCTCTTTCGGAGCTTCCCCCTCTGGTCCTTCTCGGGCCGGAAATCCGACGCTGACTCATATGGTTCCCTCTCTTCGCCAGAGTGTTTCCGACCCTTGCAATGCTATTGCAATCATTAATGGTGGGAAATCAGCAGCTCCCCAGTCAGAAGAAGGGCCAGTTTCAATATCGGCCTTGCCGCCTCACCCGCAGAGTCTTCGCCGGACAGTTTCAGATCCAAGTCCATCTCCGGCAAAAACTTTCTCTCAGTCGCCGGCCAAGGCTAACAAAGACATCAAATCAATCAAAGAAGAGAGCCCTGATTCAACGAGATTGAAAAGGATAAAAGAGCGTTTGAGGGAGGTGAATCAATGGTGGAATGAAGTGATGCAAGAACAAGAAGAACAAGCAGAAGAAGACGAAGGATTTGTATACAGCAACAATGGCGATACAGAGGAAAAATGTGAAGCAAAAATCGAAGAAACTGTTGAAGTAGAAAGGGTGGAGGAGTCATTAATCCTTCGTTTCAAGTGTCCCTGTAGTAAAGTATACAAAATCCTTCTCGCCGGAAATAGCTGTTTCTACAAACTAGTGTAG 1536 44.86 MGRGKIVIRRIDNSTNRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSGTGKLYDFASTSMKSVIDRYNKTKDGCQQHGNPTSDVKFWQREAAILRQQLQDLQKSYRQMRGEDLSGLSVKDLQNLEYHLETSLGSVRMKKEKILMDEIQDLNQKLYGKTGGKKYSFLKNSQGSVDSYVPVNLQLSQPKQHDNDDEASVTKLGNFQEPDQRENQEQEDSLMEMTELVQDPEMEQQEEDDQYLIDPSDSRLLISHLHPHRHPLSSSCGCNDGASVSNRMKRRSISPSFLSSLQDAEPKFKKLFLDKDENVSFGGYSKISLPCSFGASPSGPSRAGNPTLTHMVPSLRQSVSDPCNAIAIINGGKSAAPQSEEGPVSISALPPHPQSLRRTVSDPSPSPAKTFSQSPAKANKDIKSIKEESPDSTRLKRIKERLREVNQWWNEVMQEQEEQAEEDEGFVYSNNGDTEEKCEAKIEETVEVERVEESLILRFKCPCSKVYKILLAGNSCFYKLV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10151 24737 - BLOR02878 Blo11g00002 66202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00002 511 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Blo11g00002 511 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Blo11g00002 511 Pfam K-box region 83 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo11g00002 511 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo11g00002 511 ProSiteProfiles K-box domain profile. 86 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo11g00002 511 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 155 - -
Blo11g00002 511 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo11g00002 511 Coils Coil 429 449 - -
Blo11g00002 511 MobiDBLite consensus disorder prediction 364 422 - -
Blo11g00002 511 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo11g00002 511 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 155 - -
Blo11g00002 511 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Blo11g00002 511 Coils Coil 86 113 - -
Blo11g00002 511 MobiDBLite consensus disorder prediction 382 409 - -
Blo11g00002 511 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Blo11g00002 511 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo11g00002 511 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo11g00002 511 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00818 Blo-Chr5:29833204 Blo11g00002 Blo-Chr11:10151 6.01E-29 dispersed
Blo10g00112 Blo-Chr10:1208636 Blo11g00002 Blo-Chr11:10151 1.42E-41 dispersed
Blo11g00002 Blo-Chr11:10151 Blo14g00857 Blo-Chr14:31482245 1.66E-41 dispersed
Blo17g00092 Blo-Chr17:714384 Blo11g00002 Blo-Chr11:10151 4.71E-28 dispersed
Blo01g00888 Blo-Chr1:17763511 Blo11g00002 Blo-Chr11:10151 1.39E-35 transposed
Blo02g00050 Blo-Chr2:319832 Blo11g00002 Blo-Chr11:10151 1.59E-40 transposed
Blo11g00002 Blo-Chr11:10151 Blo17g00091 Blo-Chr17:696120 2.43E-11 wgd
Blo11g00002 Blo-Chr11:10151 Blo18g00105 Blo-Chr18:971128 8.46E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12869 PF01486 K-box 4.30E-22 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00002 K09264 - tcc:18591843 273.863