Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00004 ATGTTCGGGCATTCCCAGTCCTTGAACATGCATAATCAGATCCCTTCGGTTCCTGACGACGAAGACGACGGCGCAGCCACCGACGGAATGGATAACACCCACATGCGTTTCGATTCTCACGCCTTAGAAGACGCTGCCGGCGCTGTCGGTGAGGAAGTTGCTTCCGACGATGTGTACGTTCCTTCTGCTGGAGGGATGGAATTGGCTTCTCAACGTGGCGATGATACGAGCCAGCTCTCGCTTTCCTTTCGTGGCCAAGTTTATGTATTTGACGCCGTCACTCCTGATAAGGTTCAAGCAGTATTATTACTGTTGGGGGGATACGAGCTCTCTACGACTCAAGGTGTGGAGACGGCACATCAGAATCAAAGGAGTGTGATTGACTTCCCAAGGCACTGTAGTCAACCACAGAGAGCTGCATCATTACATAGATTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATACAGCGTCCGTCAGGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACGTCTGCTAAGAGGCCTGATGGAACTCATAGCTGGGATACTGTCCAAGGGTTGGGGCAAGTTGAAAGCCATGCAGAAAGTTTATGCACGCATTGTGGCATAAGCTCAAAAGGCACACCTATGATGAGGCGAGGTCCATCTGGACCAAGGTCTCTCTGCAATGCATGTGGACTCTTTTGGGCAAACAGGCTTCTTCGAGCCGGAAAATCCCATTTCAGAGTAGGTTGTTTGAGAAATGTCAGTGAAATGCAATATCGTGTTTGCAGAGTGCAAGCTGTACTTCTGCTTCTTGGAGGACGTGAGGATGTGCCAACTGCTGTACCAACAACTGAAGCATCTGATGCTCAAAATTACAGGGGTTTAGGTGACGGCGCCCAAAAGCGCTCAAACCTGTCAAGACGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGAAAGGAGAGATGTTTTGACAAGAAAATTAGATACACCGTACGAAAAGAGGTTGCACAAAGGATGCACCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTCCTGAAACTGTCTTGCGAAGTTGTCAGCACTGTGGTGTTTCTGAAAGTAATACTCCTGCCATGCGACGTGGACCTGCCGGACCGAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGGAGGAGTCTTTTTCTGGATAATATTGAACCTGTATGTAAATGA 1323 47.54 MFGHSQSLNMHNQIPSVPDDEDDGAATDGMDNTHMRFDSHALEDAAGAVGEEVASDDVYVPSAGGMELASQRGDDTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGYELSTTQGVETAHQNQRSVIDFPRHCSQPQRAASLHRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKRPDGTHSWDTVQGLGQVESHAESLCTHCGISSKGTPMMRRGPSGPRSLCNACGLFWANRLLRAGKSHFRVGCLRNVSEMQYRVCRVQAVLLLLGGREDVPTAVPTTEASDAQNYRGLGDGAQKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPPETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPVCK 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40146 47097 - BLOR02880 Blo11g00004 66204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00004 440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 243 - -
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28 266 438 IPR045280 GO:0006355
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28 10 258 IPR045280 GO:0006355
Blo11g00004 440 Pfam tify domain 76 106 IPR010399 -
Blo11g00004 440 SMART GATA_3 200 252 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 SMART GATA_3 377 430 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Blo11g00004 440 MobiDBLite consensus disorder prediction 351 380 - -
Blo11g00004 440 ProSiteProfiles CCT domain profile. 311 353 IPR010402 GO:0005515
Blo11g00004 440 ProSiteProfiles GATA-type zinc finger domain profile. 377 425 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 378 427 - -
Blo11g00004 440 SMART tify_2 72 107 IPR010399 -
Blo11g00004 440 MobiDBLite consensus disorder prediction 1 31 - -
Blo11g00004 440 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 Gene3D - 379 429 IPR013088 GO:0006355|GO:0008270
Blo11g00004 440 Gene3D - 200 248 IPR013088 GO:0006355|GO:0008270
Blo11g00004 440 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Blo11g00004 440 Pfam CCT motif 138 180 IPR010402 GO:0005515
Blo11g00004 440 Pfam CCT motif 311 352 IPR010402 GO:0005515
Blo11g00004 440 Pfam GATA zinc finger 206 240 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 Pfam GATA zinc finger 383 419 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 266 438 - -
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 10 258 - -
Blo11g00004 440 CDD ZnF_GATA 382 429 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 CDD ZnF_GATA 206 240 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 ProSitePatterns GATA-type zinc finger domain. 383 410 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00004 - - - jre:109021175 316.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00029 Blo-Chr3:1402467 Blo11g00004 Blo-Chr11:40146 1.15E-23 dispersed
Blo11g00004 Blo-Chr11:40146 Blo15g00319 Blo-Chr15:3679218 2.52E-08 dispersed
Blo17g00100 Blo-Chr17:844071 Blo11g00004 Blo-Chr11:40146 2.75E-62 transposed
Blo11g00004 Blo-Chr11:40146 Blo12g00738 Blo-Chr12:25745729 7.49E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo12g00738 . 65 258 Tify Gene Family AT4G24470 63.5 8.3e-61 231.1
Blo11g00004 . 1 240 Tify Gene Family AT4G24470 52.2 1.3e-53 207.2
Blo17g00100 . 25 241 Tify Gene Family AT1G51600 52.2 9.7e-51 197.6
Blo12g00738 . 46 265 Tify Gene Family AT1G51600 51.8 8.2e-50 194.5
Blo12g00738 . 65 258 Tify Gene Family AT4G24470 63.5 8.3e-61 231.1
Blo11g00004 . 1 240 Tify Gene Family AT4G24470 52.2 1.3e-53 207.2
Blo17g00100 . 25 241 Tify Gene Family AT1G51600 52.2 9.7e-51 197.6
Blo12g00738 . 46 265 Tify Gene Family AT1G51600 51.8 8.2e-50 194.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12870 PF06203 CCT 1.70E-13 CL0281 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00004 Blo_Chr11 FPKM 8.097416 8.84319 3.057441 3.116912 8.895706 9.711402 7.593046 6.786349 6.916441 6.340377