Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00004 ATGTTCGGGCATTCCCAGTCCTTGAACATGCATAATCAGATCCCTTCGGTTCCTGACGACGAAGACGACGGCGCAGCCACCGACGGAATGGATAACACCCACATGCGTTTCGATTCTCACGCCTTAGAAGACGCTGCCGGCGCTGTCGGTGAGGAAGTTGCTTCCGACGATGTGTACGTTCCTTCTGCTGGAGGGATGGAATTGGCTTCTCAACGTGGCGATGATACGAGCCAGCTCTCGCTTTCCTTTCGTGGCCAAGTTTATGTATTTGACGCCGTCACTCCTGATAAGGTTCAAGCAGTATTATTACTGTTGGGGGGATACGAGCTCTCTACGACTCAAGGTGTGGAGACGGCACATCAGAATCAAAGGAGTGTGATTGACTTCCCAAGGCACTGTAGTCAACCACAGAGAGCTGCATCATTACATAGATTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATACAGCGTCCGTCAGGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACGTCTGCTAAGAGGCCTGATGGAACTCATAGCTGGGATACTGTCCAAGGGTTGGGGCAAGTTGAAAGCCATGCAGAAAGTTTATGCACGCATTGTGGCATAAGCTCAAAAGGCACACCTATGATGAGGCGAGGTCCATCTGGACCAAGGTCTCTCTGCAATGCATGTGGACTCTTTTGGGCAAACAGGCTTCTTCGAGCCGGAAAATCCCATTTCAGAGTAGGTTGTTTGAGAAATGTCAGTGAAATGCAATATCGTGTTTGCAGAGTGCAAGCTGTACTTCTGCTTCTTGGAGGACGTGAGGATGTGCCAACTGCTGTACCAACAACTGAAGCATCTGATGCTCAAAATTACAGGGGTTTAGGTGACGGCGCCCAAAAGCGCTCAAACCTGTCAAGACGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGAAAGGAGAGATGTTTTGACAAGAAAATTAGATACACCGTACGAAAAGAGGTTGCACAAAGGATGCACCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTCCTGAAACTGTCTTGCGAAGTTGTCAGCACTGTGGTGTTTCTGAAAGTAATACTCCTGCCATGCGACGTGGACCTGCCGGACCGAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGGAGGAGTCTTTTTCTGGATAATATTGAACCTGTATGTAAATGA 1323 47.54 MFGHSQSLNMHNQIPSVPDDEDDGAATDGMDNTHMRFDSHALEDAAGAVGEEVASDDVYVPSAGGMELASQRGDDTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGYELSTTQGVETAHQNQRSVIDFPRHCSQPQRAASLHRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKRPDGTHSWDTVQGLGQVESHAESLCTHCGISSKGTPMMRRGPSGPRSLCNACGLFWANRLLRAGKSHFRVGCLRNVSEMQYRVCRVQAVLLLLGGREDVPTAVPTTEASDAQNYRGLGDGAQKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPPETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPVCK 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40146 47097 - BLOR02880 Blo11g00004 66204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00004 440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 243 - -
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28 266 438 IPR045280 GO:0006355
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28 10 258 IPR045280 GO:0006355
Blo11g00004 440 Pfam tify domain 76 106 IPR010399 -
Blo11g00004 440 SMART GATA_3 200 252 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 SMART GATA_3 377 430 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Blo11g00004 440 MobiDBLite consensus disorder prediction 351 380 - -
Blo11g00004 440 ProSiteProfiles CCT domain profile. 311 353 IPR010402 GO:0005515
Blo11g00004 440 ProSiteProfiles GATA-type zinc finger domain profile. 377 425 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 378 427 - -
Blo11g00004 440 SMART tify_2 72 107 IPR010399 -
Blo11g00004 440 MobiDBLite consensus disorder prediction 1 31 - -
Blo11g00004 440 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 Gene3D - 379 429 IPR013088 GO:0006355|GO:0008270
Blo11g00004 440 Gene3D - 200 248 IPR013088 GO:0006355|GO:0008270
Blo11g00004 440 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Blo11g00004 440 Pfam CCT motif 138 180 IPR010402 GO:0005515
Blo11g00004 440 Pfam CCT motif 311 352 IPR010402 GO:0005515
Blo11g00004 440 Pfam GATA zinc finger 206 240 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 Pfam GATA zinc finger 383 419 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 266 438 - -
Blo11g00004 440 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 10 258 - -
Blo11g00004 440 CDD ZnF_GATA 382 429 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 CDD ZnF_GATA 206 240 IPR000679 GO:0006355|GO:0043565
Blo11g00004 440 ProSitePatterns GATA-type zinc finger domain. 383 410 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00029 Blo-Chr3:1402467 Blo11g00004 Blo-Chr11:40146 1.15E-23 dispersed
Blo11g00004 Blo-Chr11:40146 Blo15g00319 Blo-Chr15:3679218 2.52E-08 dispersed
Blo17g00100 Blo-Chr17:844071 Blo11g00004 Blo-Chr11:40146 2.75E-62 transposed
Blo11g00004 Blo-Chr11:40146 Blo12g00738 Blo-Chr12:25745729 7.49E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12870 PF06203 CCT 1.70E-13 CL0281 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00004 - - jre:109021175 316.62