Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00012 ATGCAAGGTGAATATGTAGAGGCAAAGATAGAACCAAACACCATGTTTCCCAAGCTCCATCACCGTCAACCTCAATCCCTCCCCTTTTCTCATCCCTTCCAAATCCCTGCAAGAGAATGTCATCACCCAGAAGAAGAAGAAGAAGAAGAAGAAGTAAGCCCTGTCTGTCGTACACCATCCAGAAAGACCTCCGAGCCATCCTCCGGCGACTGCGCCACCATTGAAGTCGTCAAACGCCCCCGCGGCCGCCCTCCTGGCTCCAAGAACAAACCCAAAACGGGGGTTGTTGCTGCTCGCGATCCGGAGCCTTCGATGGGCCCTTATATTCTCGAAGTTGCCGGAGGTAGTGATGTCGTCGAAGCCATCGCCCGCTTTTGCCGCAGAAAAAATATGGGGCTTTGTGTTTTCACGGGCTCTGGCACTGTTTCTAACGTTACTCTACAACAACCCTCTGCCACTCCTGGAGCGACGGTGACTTTTCATGGTCGGTTTCATATCCTCTCCATTTCCGCCACGTTTCTCCCCCATTCGACAGCGTTTCCGGTTCCCAATGGCTTTGCTATCTATCTTGCCGGTCCTCAGGGCCAGGTCGTCGGCGGTTTAGTCTCTGGAAATTTGATTGCCGCCGAAAGTGTGTTCGTTATAGCTTCTTCGTTCGACAATCCATCTTATCACCGACTTTCGGATGAGGATGAGACTAGAAACTCAGACGCTAGCGGTGGCGGAGGCGGTGGCGGTGGGAAAAACTCTCCTACAGTCTTCGGTGCTAGAGATAGTGGGAGTCACGCTCCGGCGGAGTCGGTAGGCATGCCTACTTATAGCTGTCCTGTTCCCTCCGATGTAATATGGGCTCCCACTGCAAGAGCACCTCCACCTCCATTCTAA 885 52.99 MQGEYVEAKIEPNTMFPKLHHRQPQSLPFSHPFQIPARECHHPEEEEEEEEVSPVCRTPSRKTSEPSSGDCATIEVVKRPRGRPPGSKNKPKTGVVAARDPEPSMGPYILEVAGGSDVVEAIARFCRRKNMGLCVFTGSGTVSNVTLQQPSATPGATVTFHGRFHILSISATFLPHSTAFPVPNGFAIYLAGPQGQVVGGLVSGNLIAAESVFVIASSFDNPSYHRLSDEDETRNSDASGGGGGGGGKNSPTVFGARDSGSHAPAESVGMPTYSCPVPSDVIWAPTARAPPPPF 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 111911 112795 + BLOR02888 Blo11g00012 66212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00012 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 232 - -
Blo11g00012 294 Gene3D - 107 237 - -
Blo11g00012 294 MobiDBLite consensus disorder prediction 224 270 - -
Blo11g00012 294 ProSiteProfiles PPC domain profile profile. 102 240 IPR005175 -
Blo11g00012 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 4 293 - -
Blo11g00012 294 MobiDBLite consensus disorder prediction 18 100 - -
Blo11g00012 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 293 IPR014476 GO:0003680
Blo11g00012 294 CDD DUF296 107 217 IPR005175 -
Blo11g00012 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 221 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00012 Blo-Chr11:111911 Blo18g00103 Blo-Chr18:928542 1.82E-103 dispersed
Blo11g00012 Blo-Chr11:111911 Blo12g00730 Blo-Chr12:25644970 6.65E-113 wgd
Blo11g00012 Blo-Chr11:111911 Blo17g00096 Blo-Chr17:747745 3.18E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00012 - - zju:107421268 361.303